PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG031132t1
Common NameTCM_031132
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 597aa    MW: 66239.7 Da    PI: 6.5533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG031132t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.26.3e-1312235921373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+a+s++++   ++l+a+ ++ +s  g+p+qRl ay++eAL ar   s+s++y+a +++e +    ++ l+++++++e++P+lkf
  Thecc1EG031132t1 223 LKQLLIVCAQALSENNMDDFDKLIAKARNAVSICGEPIQRLGAYMVEALVARKEASGSNIYRARRCREPE---GKDLLSYMQILYEICPYLKF 312
                       679******************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       ++++aN aI ea  +e+r+HiiDf i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++g+rLa + e++++p+ef+  v  
  Thecc1EG031132t1 313 GYMAANGAIAEACRTEDRIHIIDFHIGQGTQWVTLLQALAARPGGAPHVRITGIDDPLSKyaRGGGLEAVGRRLAALSEKFNIPVEFHG-VPV 404
                       ********************************************************999989999************************.688 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                          d++  +L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl rf+e+l+yy a+f+s++++lpr
  Thecc1EG031132t1 405 FAPDITRGMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESNTNTAPFLPRFIETLDYYLAMFESIDETLPR 497
                       89999**************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       + +eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+
  Thecc1EG031132t1 498 DRKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-KHYKLVEKDGAMLLGWKDRNLISA 589
                       *****************************************************************999.55********************** PP

              GRAS 371 SaW 373
                       SaW
  Thecc1EG031132t1 590 SAW 592
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.924197574IPR005202Transcription factor GRAS
PfamPF035142.2E-128223592IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MDAHQLFSYG VTGASLSYST SYSTVPSIPN RLFSSLKSDI GNSPNSPFSS QFDSPFSTQF  60
DCDTNTTLSD SQEQHSSTEN LSGLSPSCNS SFESNTYCHK LSPSLDCKRE ILPLCSGGTS  120
YIQDANSSHK IIYTLQELET ALMAPDADEE VTTPNVSCGE SSRPQTTGQR SRAWSQEHQG  180
SLVLQPQTSF VSRHRQSTEV SHAEKRQKAI GDLSLQDIPP GNLKQLLIVC AQALSENNMD  240
DFDKLIAKAR NAVSICGEPI QRLGAYMVEA LVARKEASGS NIYRARRCRE PEGKDLLSYM  300
QILYEICPYL KFGYMAANGA IAEACRTEDR IHIIDFHIGQ GTQWVTLLQA LAARPGGAPH  360
VRITGIDDPL SKYARGGGLE AVGRRLAALS EKFNIPVEFH GVPVFAPDIT RGMLDVRPGE  420
ALAVNFPLQL HHTPDESVDV NNPRDGLLRM VKSLSPKVTT LVEQESNTNT APFLPRFIET  480
LDYYLAMFES IDETLPRDRK ERINVEQHCL ARDIVNVIAC EGKERVERHE LFGKWKSRLT  540
MAGFRQYPLS SYVNSVIRSL LRCYSKHYKL VEKDGAMLLG WKDRNLISAS AWHCDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6223059226378Protein SCARECROW
5b3h_A1e-6223059225377Protein SCARECROW
5b3h_D1e-6223059225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021110.20.0PREDICTED: chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A061F7I00.0A0A061F7I0_THECC; GRAS family transcription factor isoform 1
STRINGEOY126350.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-179GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]