PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030853t1
Common NameTCM_030853
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 586aa    MW: 63861.1 Da    PI: 7.3682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030853t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.6e-153683148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed  l+++v+ +G g+W+++ +  g+ R++k+c++rw ++l
  Thecc1EG030853t1 36 KGPWTAAEDAVLAEYVRTHGEGNWNAVQKNTGLARCGKSCRLRWANHL 83
                      79******************************************9986 PP

2Myb_DNA-binding491.4e-1589132146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++++eE+ ++v++++++G++ W++ a  ++ gRt++++k++w++
  Thecc1EG030853t1  89 KGAFSPEEERIIVELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 132
                       799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9813183IPR017930Myb domain
SuperFamilySSF466895.99E-2934130IPR009057Homeodomain-like
SMARTSM007173.6E-123585IPR001005SANT/Myb domain
PfamPF002494.4E-143683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-233790IPR009057Homeodomain-like
CDDcd001676.45E-103883No hitNo description
PROSITE profilePS5129426.0584138IPR017930Myb domain
SMARTSM007178.2E-1688136IPR001005SANT/Myb domain
PfamPF002492.2E-1489132IPR001005SANT/Myb domain
CDDcd001673.67E-1191132No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2591137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MMLMMGGNNQ VTTQNEGGGT SGMHNSCVEG GLTLKKGPWT AAEDAVLAEY VRTHGEGNWN  60
AVQKNTGLAR CGKSCRLRWA NHLRPNLKKG AFSPEEERII VELHAKMGNK WARMATQLPG  120
RTDNEIKNYW NTRVKRKQRQ GLPLYPPEIQ PLYPQHHHSQ PTTPIPSSPT QQSPSSFSFQ  180
APTSLHHGSM LSPPPHSFHL PRSASQPLLH ISHHAAAAAA APTPFLHSPS PASTPPPLPS  240
PTPSTPPSTS PLPSPPAFST LPLFDSSTFN TSTSNITTVN ATSSDHFFFP RTLPSLQTPL  300
RYKRFKQNND NAENNNNNHN ITVNSSNGTT NSSFMFPLSP LLKSIDVFNP HTTVAATATT  360
SSWTPQHYPS YSLDPITLDL ASSSRILRPH FDSGQFISTP GVAYPLKTEL PSNQLLSQDG  420
NSEVTLHTNK VNNYSKYSSN DHSSNHPNLS MPVSGNGLLE DMLEEAQVLT GSNDMLTRQG  480
GLVDFSSSSE GLASVLKPRE ETQEQINTMH EDYSKLLNVV PSSMPIPEWY SDSGEGSNGQ  540
SSVITDDNLG LEMHQIASLL PVDHIAHKHG RKPSSRSWDN LPGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30341375107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138RVKRKQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020787.20.0PREDICTED: myb-like protein A
TrEMBLA0A061F6J80.0A0A061F6J8_THECC; Transcription factor MYB811
STRINGEOY123120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.19e-70myb domain protein 120
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]