PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030835t1
Common NameTCM_030835
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 581aa    MW: 63579.9 Da    PI: 6.88
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030835t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30345403259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Thecc1EG030835t1 345 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCADDRTILNTTYEGNHNHP 403
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33329405IPR003657WRKY domain
SuperFamilySSF1182901.83E-27337405IPR003657WRKY domain
PROSITE profilePS5081129.184339405IPR003657WRKY domain
SMARTSM007742.3E-36344404IPR003657WRKY domain
PfamPF031061.3E-26346403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDEGGTGARR LSFDHTVDAA ISVFNPKPSL FGVGPFRSSC KPDPAARKQA AFDMEQDDQH  60
VESSDGMKRV VNEMDFFGSG GRSSSKEEAK ADVKIESERQ GLVQENDEPA AADVNTGLNL  120
LTTNIVSEKS VPGDRTSQNL KDKERVNQLA DVRAELERIN EENQRLKVTL NQVNSNYYAL  180
QMHLVSLMQR QQNRRDESSE ASEMNRTTEE KRHGEVIVAR QFIDLGQSAK AEKDELSESS  240
SDGRVQEFSG SPGNTIVESM ERRKTNSSRN CETVPIDPIS RKDLMDPGRN QREETPEGRP  300
HPGWLQNKVP KFNTSRDVEL AQETMAMIRK ARVSVRARSE ASMISDGCQW RKYGQKMAKG  360
NPCPRAYYRC TMATGCPVRK QVQRCADDRT ILNTTYEGNH NHPLPPAAMA MASTTSAAAS  420
MLLSGSMPSA DGMMNSSTIL PKGIMLPCSP NSVTLSASAP FPTVTLDLTY NPNQRPTSQL  480
LAPSPNIPHL LGHPIYNQSK LLGLFSSQGI EHHPHLAQNQ MQPPHPMADT VNAATAAITA  540
DPNFTAALVA AITSIIGNPH RDNSGNNNSP TSRNTVDNNT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21331407176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020766.20.0PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A061F5H90.0A0A061F5H9_THECC; WRKY transcription factor-like protein
STRINGEOY122910.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1924667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-111WRKY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]