PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030804t1
Common NameTCM_030804
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 229aa    MW: 25031.9 Da    PI: 8.2202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030804t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.8e-213383155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++aa+++l+g
  Thecc1EG030804t1 33 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDAAARSLRG 83
                      68********.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-143383IPR001471AP2/ERF domain
CDDcd000182.48E-193393No hitNo description
SMARTSM003803.0E-373497IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-233493IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-323491IPR001471AP2/ERF domain
PROSITE profilePS5103223.8023491IPR001471AP2/ERF domain
PRINTSPR003674.8E-113546IPR001471AP2/ERF domain
PRINTSPR003674.8E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRRGRGAAAA AAAAATAVAT KPALEPNGSI KEPRYRGVRK RPWGRFAAEI RDPWKKTRVW  60
LGTFDSAEEA ARAYDAAARS LRGSKAKTNF PINSSNIPAF PFETHHHNNE GFIDQQRLYP  120
MGDFQDPEVN PQRPTRSSMS STVESFSGPR PAQPPQKSTD FAVVSTRKYH PRTPPVVPED  180
CHSDCDSSSS VVDDGDIASS SCRKTLPFDL NFPPLDDVDD LQCTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2134911472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020716.11e-169PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803391e-56ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A061F5D91e-167A0A061F5D9_THECC; Ethylene responsive element binding factor 3, putative
STRINGEOY122411e-168(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-41ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]