PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG030479t2

Common Name

TCM_030479

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 315aa MW: 34696.2 Da PI: 6.5054

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030479t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.7	5.2e-28	43	107	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsek..........AtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG+++ AtPk+i+++m+vkgLtl h+kSHLQkYRl Thecc1EG030479t2 43 KPRLRWTADLHDRFVDAVTQLGGPNNffclwvttaeATPKAIMRTMNVKGLTLFHLKSHLQKYRL 107 79*******************9854444445555**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-29	40	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-19	43	108	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.42E-14	43	109	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-6	45	106	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-15	151	196	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDMYHPRLQA HLHHPHHQEE MLQNLNHKGA LAEPCLVLTS DPKPRLRWTA DLHDRFVDAV 60 TQLGGPNNFF CLWVTTAEAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKDMGEGPK 120 DGMSASYLLE SPGTNNSTPS LPSSDMNEGY EVKEALRAQM EVQSKLHLQV EAEKHLQIRQ 180 DAERRYMAML ERACKMLADH FIGGGADTET ENLGFSSKVP RNYCVDPLGF YSSQSAEVVN 240 ACGQDEEMPS GLHSQRADCS TESCLTSHES PGGLTMEGSA VEGKKKMLNL DSTTGSLIWG 300 DAKVNPHGLT GYGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-14	43	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	43	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	43	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	43	109	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026437.1	0.0	PREDICTED: protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	2e-56	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A061GPK9	0.0	A0A061GPK9_THECC; Homeodomain-like superfamily protein isoform 2
STRING	EOY29059	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17085	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	8e-59	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG030479t2
Entrez Gene	18597376

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]