PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG030479t1 | ||||||||
Common Name | TCM_030479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 33511.9 Da PI: 6.7175 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.4e-33 | 43 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Thecc1EG030479t1 43 KPRLRWTADLHDRFVDAVTQLGGPNKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.245 | 40 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-31 | 40 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-16 | 43 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-24 | 43 | 98 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-7 | 45 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.6E-15 | 141 | 186 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDMYHPRLQA HLHHPHHQEE MLQNLNHKGA LAEPCLVLTS DPKPRLRWTA DLHDRFVDAV 60 TQLGGPNKAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKDMGEGPK DGMSASYLLE 120 SPGTNNSTPS LPSSDMNEGY EVKEALRAQM EVQSKLHLQV EAEKHLQIRQ DAERRYMAML 180 ERACKMLADH FIGGGADTET ENLGFSSKVP RNYCVDPLGF YSSQSAEVVN ACGQDEEMPS 240 GLHSQRADCS TESCLTSHES PGGLTMEGSA VEGKKKMLNL DSTTGSLIWG DAKVNPHGLT 300 GYGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007026436.1 | 0.0 | PREDICTED: protein PHR1-LIKE 2 isoform X3 | ||||
Swissprot | Q94A57 | 2e-60 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A061GI02 | 0.0 | A0A061GI02_THECC; Homeodomain-like superfamily protein isoform 1 | ||||
STRING | EOY29059 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 9e-63 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG030479t1 |
Entrez Gene | 18597376 |
Publications ? help Back to Top | |||
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