PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030444t1
Common NameTCM_030444
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 335aa    MW: 38052.1 Da    PI: 7.1222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030444t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.3e-08129170446
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       W ++++ ll +++++ G g W+++ +++g ++t + c++++ +
  Thecc1EG030444t1 129 WNADDEILLPEGIEMCGLGIWAKVVEHVG-TKTKEKCIEHYDN 170
                       *****************************.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002910.00243475IPR000433Zinc finger, ZZ-type
SuperFamilySSF578507.18E-93881No hitNo description
PfamPF005693.0E-53875IPR000433Zinc finger, ZZ-type
CDDcd023351.58E-153979No hitNo description
PROSITE profilePS501359.9354077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.26E-8123175IPR009057Homeodomain-like
PROSITE profilePS5129314.748124176IPR017884SANT domain
SMARTSM007175.0E-7125174IPR001005SANT/Myb domain
PfamPF002491.9E-6128170IPR001005SANT/Myb domain
CDDcd001671.33E-7129171No hitNo description
Gene3DG3DSA:1.10.10.608.9E-4129171IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRNMKYRGRE FIQYEEHEVL GLLRIDLPRT KDGKRALCHC NYCNKDIRIK CAVCPDLDQC  60
IECFSAGAEV TPHKMNHPYG CHGKSLLETS FSLADNLLYC QVFCSILSAD NRVLVNRTIY  120
RFLFICPDWN ADDEILLPEG IEMCGLGIWA KVVEHVGTKT KEKCIEHYDN VYMKSPYVPL  180
ADVCHVVGKN RRELLAMAKG RGEDKKGSCM LGELTVKEES SFLLQESTRQ SNRPIQEVDR  240
ANNPLILTFK KQVTDPDMET SDNSKCFKWL LRKSSLVRSI EEEVANKTVP EGIIDSLLLI  300
EAMDRKMKFP PSNSMKEAFC TVVLHCTLAT LSQP*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026320.21e-80PREDICTED: transcriptional adapter ADA2b isoform X1
RefseqXP_007026321.26e-81PREDICTED: transcriptional adapter ADA2b isoform X2
SwissprotQ75LL63e-57TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A061GHF10.0A0A061GHF1_THECC; Histone acetyltransferase complex component-like protein
STRINGEOY289960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2214245
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]