PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG030082t2 | ||||||||
Common Name | TCM_030082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25189.7 Da PI: 5.4297 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.1e-10 | 73 | 119 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + K++Ka iL Av+ + +L Thecc1EG030082t2 73 KACREKMRRDRLNDRFLELGSILDPG---RPLKVDKAVILVDAVRMVTQL 119 678**********************8...88**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.493 | 68 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-13 | 72 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-7 | 72 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.89E-8 | 72 | 124 | No hit | No description |
SMART | SM00353 | 2.7E-8 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-12 | 75 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMSRQPNGED LVSSENPSGW IFDDYGLLED IPVPGGDLPS LDPAAPIWSS QSLTCSTPPL 60 RARSGSCSAS GSKACREKMR RDRLNDRFLE LGSILDPGRP LKVDKAVILV DAVRMVTQLR 120 DEAQKLRESN ESLQEKINEL KAEKNELRDE KQRLKTEKEN LEQQVKALGT QPGFLPHPPA 180 IPTPFSTPGQ VVGGKLVPFV GYPGVSMWQF LPPASVDTSQ DHILRPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978791.1 | 1e-161 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 2e-84 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A061GF70 | 1e-166 | A0A061GF70_THECC; DNA binding protein, putative isoform 2 | ||||
STRING | EOY28539 | 1e-151 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-78 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG030082t2 |
Entrez Gene | 18597043 |