PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG030078t1 | ||||||||
Common Name | TCM_030078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 136aa MW: 14100.3 Da PI: 11.1293 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 24.4 | 6.3e-08 | 17 | 99 | 12 | 93 |
NF-YC 12 katdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ++ k ++P+ ri + lka + +++ a aPv l+ e++ e+ + + a++nkr+ + i+ av + + l+ Thecc1EG030078t1 17 QSRSQKaGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKRTRIVPRHIQLAVRNDEELSRLL 99 5544443679***************************************99********************999887666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00414 | 1.2E-76 | 4 | 124 | IPR002119 | Histone H2A |
Gene3D | G3DSA:1.10.20.10 | 1.4E-60 | 9 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.7E-44 | 9 | 125 | IPR009072 | Histone-fold |
CDD | cd00074 | 1.48E-65 | 9 | 121 | No hit | No description |
Pfam | PF00125 | 2.3E-15 | 13 | 90 | IPR007125 | Histone H2A/H2B/H3 |
PRINTS | PR00620 | 5.9E-51 | 15 | 37 | IPR002119 | Histone H2A |
PROSITE pattern | PS00046 | 0 | 23 | 29 | IPR032458 | Histone H2A conserved site |
PRINTS | PR00620 | 5.9E-51 | 44 | 59 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 5.9E-51 | 59 | 72 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 5.9E-51 | 73 | 87 | IPR002119 | Histone H2A |
Pfam | PF16211 | 1.1E-18 | 93 | 127 | IPR032454 | Histone H2A, C-terminal domain |
PRINTS | PR00620 | 5.9E-51 | 101 | 119 | IPR002119 | Histone H2A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MAGRGKAIGS GAKKMGQSRS QKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL 60 AAEVLELAGN AARDNKRTRI VPRHIQLAVR NDEELSRLLG TVTIANGGVL PNIHNMLLPK 120 KTGTGSKAGG PAADD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5kgf_C | 1e-61 | 1 | 130 | 1 | 129 | Histone H2A type 1 |
5kgf_G | 1e-61 | 1 | 130 | 1 | 129 | Histone H2A type 1 |
6c0w_C | 9e-62 | 1 | 130 | 1 | 129 | Histone H2A |
6c0w_G | 9e-62 | 1 | 130 | 1 | 129 | Histone H2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025913.2 | 2e-91 | PREDICTED: probable histone H2A.3 | ||||
Swissprot | Q43312 | 3e-77 | H2A7_WHEAT; Protein H2A.7 | ||||
TrEMBL | A0A061GF66 | 7e-91 | A0A061GF66_THECC; Histone H2A | ||||
STRING | EOY28535 | 1e-91 | (Theobroma cacao) |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG030078t1 |
Entrez Gene | 18597039 |
Publications ? help Back to Top | |||
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