PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030056t1
Common NameTCM_030056
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 285aa    MW: 31554.4 Da    PI: 5.7995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030056t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000233875755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +ErrRR+++ +++ +Lr+            ++Ka+i e A+ YI++Lq
  Thecc1EG030056t1 38 HAERRRRQKLSDRLLTLRSS-----------MNKATIIEDAITYIQELQ 75
                      68***************974...........6788*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-112989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-53780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-93879No hitNo description
Gene3DG3DSA:4.10.280.101.7E-73992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048656Biological Processanther wall tapetum formation
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEFGGSGMSD RGPRRGRMGR RRLEDDEDDQ EFISKNLHAE RRRRQKLSDR LLTLRSSMNK  60
ATIIEDAITY IQELQKSSQV LTEQLLEMEG SSEEGGKPMA DEIDAAEDMK NYGIKEDVNV  120
TNIDGNKLLI RIILEKRRGC FTKLIEAMNY LGFELCETNV TTCKGAMLFS SCVQELKVLP  180
CFLSFMARIH HLCIVLAAGF FSFIVMFQAT DGSRLTPPEA GIDADPPDVK MIAEGPVIRA  240
IGKHSSLDKS AAGGDVILGG FVMAVVVAVV CYLRITRKSQ EAYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11945RRRLEDDEDDQEFISKNLHAERRRRQK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294673.10.0transcription factor DYT1-like
TrEMBLA0A061GN230.0A0A061GN23_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY285140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-33bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]