PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030020t1
Common NameTCM_030020
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 265aa    MW: 29778.1 Da    PI: 6.3722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030020t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-141562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W+++Ed +l+ +++++G  +W+  a+  g+ R++k+c++rw +yl
  Thecc1EG030020t1 15 KGPWSPDEDRKLIAYINRHGIWNWTEMAKPAGLQRSGKSCRLRWVNYL 62
                      79******************99************************97 PP
2Myb_DNA-binding60.24.4e-1968113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T eEde +++++++lG++ W+ Ia++++ gRt++++k++w+++l
  Thecc1EG030020t1  68 RGNFTREEDETIIELHERLGNR-WSVIASRLP-GRTDNEIKNHWHTHL 113
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8221062IPR017930Myb domain
SuperFamilySSF466891.48E-3013109IPR009057Homeodomain-like
SMARTSM007172.1E-101464IPR001005SANT/Myb domain
PfamPF002496.0E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231669IPR009057Homeodomain-like
CDDcd001672.32E-91762No hitNo description
PROSITE profilePS5129428.02363117IPR017930Myb domain
SMARTSM007174.3E-1867115IPR001005SANT/Myb domain
PfamPF002492.4E-1768113IPR001005SANT/Myb domain
CDDcd001673.53E-1370113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2770118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAKASQSVEK RTLRKGPWSP DEDRKLIAYI NRHGIWNWTE MAKPAGLQRS GKSCRLRWVN  60
YLRPGIKRGN FTREEDETII ELHERLGNRW SVIASRLPGR TDNEIKNHWH THLRKRLKYN  120
SVSTSELFQI SNVETVKKSS SEVDLPPAIA PANSESSSAI QLSQQFSTDS LPSSGSDPAA  180
EIDKNQTEDT LVSSETFGEL QSILEQQFTS EGSSTAENYG AIYAEPGISA TSSQLLWFQE  240
SMYQGNSCND LWLNFLVKEN MYAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-29611718128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025853.20.0PREDICTED: myb-related protein Myb4 isoform X2
RefseqXP_017978746.10.0PREDICTED: myb-related protein Myb4 isoform X1
TrEMBLA0A061GF110.0A0A061GF11_THECC; MYB21, putative
STRINGEOY284750.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-54myb domain protein 74
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]