PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029976t2
Common NameTCM_029976
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 888aa    MW: 97135 Da    PI: 7.6943
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029976t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18341440198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  +
  Thecc1EG029976t2 341 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDVVTFSRLE-PG 431
                       89**************************555566778***************9989999999***9.********************655.56 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv++ ++
  Thecc1EG029976t2 432 GKLVMGCRK 440
                       656665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-30337446IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-19338437IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-21339440No hitNo description
SMARTSM010196.7E-20341441IPR003340B3 DNA binding domain
PfamPF023621.1E-15341440IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87341442IPR003340B3 DNA binding domain
PROSITE profilePS5105014.012568618IPR011124Zinc finger, CW-type
PfamPF074969.2E-12573615IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MTSTSGAASS SKICFNSDCK DLKSERARKG WRLRTGELAE LCDRCASAFE EGRFCDTFHL  60
NASGWRSCES CGKRVHCGCI VSVYAFTLLD AGGIECIACA RKNVVLGSNS SWPPSLLFHP  120
PLSERLKDYS AKGWSQLAGS GPVPWRQAPS LFNSPISQPE WHSKVCYEVD LSTGIDRLNA  180
DRLSTPSLEK KKIEDFSERL MNGTLKLGTR DIHENGNAGI NCEEQPGSCL TKSQQPSLKE  240
EPSNPPLGLS VPYTSPDEAN GQIGVSGPHL RPNPPPPLAK QFHSNLHNGL DSSGETQIRN  300
GRPRPDGRGR NQLFPRYWPR FTDQDLQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK  360
KCAEAYFPPI SQPEGLPLKV QDSKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQNMQLQAG  420
DVVTFSRLEP GGKLVMGCRK ASTASASEQD NEAKNSNGVS THGDAELADP TSWSKVDKSG  480
YIAKEALGTK LAVSRKRKNS TLGSKSKRLR IDNEDLIELK LTWEEAQGLL RPPPNHVPSV  540
VVIEGFEFEE YEDAPILGKP TIFATDNSGE KIQWAQCEDC FKWRRLPSSA LLPSKWTCAS  600
NSWDPERSFC SVAQELTAEQ LDDLLPHCNP AASKKMKAAK QEPENVDALE GLDTLANLAI  660
LGEGEALPAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCQ TVKRRFRTLM  720
LRREKKQSQK EAETTRKKQQ PSLPDKLLDD DPLPSTNAGN SSPNPKKLVS EGSDDDPNRI  780
KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMMRLLQDAT ERYLRQQRML SSGVNSDSTV  840
TQAQSGGGTE GEKTSSSVNL GASHQDADRD HSAVFSIKSS APTSATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-653194441126B3 domain-containing transcription repressor VAL1
5yzz_C2e-653194441126B3 domain-containing transcription repressor VAL1
5z00_C2e-653194441126B3 domain-containing transcription repressor VAL1
5z00_G2e-653194441126B3 domain-containing transcription repressor VAL1
5z00_K2e-653194441126B3 domain-containing transcription repressor VAL1
5z00_M2e-653194441126B3 domain-containing transcription repressor VAL1
6j9a_A2e-653194442127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025776.20.0PREDICTED: B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A061GG490.0A0A061GG49_THECC; HSI2-like 1 isoform 2
STRINGEOY283970.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-158HSI2-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]