PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029931t1

Common Name

TCM_029931

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 352aa MW: 38911.6 Da PI: 9.5885

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029931t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.6e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ Thecc1EG029931t1 15 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIV 106 79**************************.89***********8888999*********************************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Thecc1EG029931t1 107 TSnGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 9867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-65	8	176	IPR003441	NAC domain
PROSITE profile	PS51005	62.447	15	176	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MESTDSSSAS PHPQLPPGFR FHPTDEELVV HYLKRKAASA PLPVTIIAEV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIVTSNG NQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDNNSTSK PQIADVANRK GSLRLDDWVL CRIYKKNNTQ 180 RPMERDKDYS TVGMLATLPT STHQNPKPPT SKATSYGSLL ENEENFFEGI LTGEGMQHST 240 ISQIPAASSS SKQDLSMSLA STTTNTFPVK RTIPPQYWNE PNSSFGSQSG KRFQGDLNSS 300 STAGIDDTNS FVSLLHHLPQ NAPFYPGTLV GSLGDGVSRQ QFILPSMNWN S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MESTDSSSAS PHPQLPPGFR FHPTDEELVV HYLKRKAASA PLPVTIIAEV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIVTSNG NQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDNNSTSK PQIADVANRK GSLRLDDWVL CRIYKKNNTQ  180
RPMERDKDYS TVGMLATLPT STHQNPKPPT SKATSYGSLL ENEENFFEGI LTGEGMQHST  240
ISQIPAASSS SKQDLSMSLA STTTNTFPVK RTIPPQYWNE PNSSFGSQSG KRFQGDLNSS  300
STAGIDDTNS FVSLLHHLPQ NAPFYPGTLV GSLGDGVSRQ QFILPSMNWN S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-77	15	179	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-77	15	179	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-77	15	179	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-77	15	179	17	168	NO APICAL MERISTEM PROTEIN
4dul_A	7e-77	15	179	17	168	NAC domain-containing protein 19
4dul_B	7e-77	15	179	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025712.1	0.0	PREDICTED: NAC transcription factor 25
Swissprot	Q9LD44	1e-109	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A061GMK3	0.0	A0A061GMK3_THECC; NAC domain containing protein 25
STRING	EOY28334	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-110	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Thecc1EG029931t1
Entrez Gene	18596903

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]