PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029918t1

Common Name

TCM_029918

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 373aa MW: 41084.2 Da PI: 9.5421

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029918t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.6	4.1e-36	108	165	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++ lkcprCdstntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ Thecc1EG029918t1 108 QSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKR 165 57889***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	109	165	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	111	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.521	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MLTSHHLPGN FLAFDTLHYP IASKHHTVWL ISKNLIILLF FRTLLLIALT CGSLLEVSEV 60 RYRDMGLSSK QVSSDGLGWS QSLLQAQTLG LPKASPAKRQ QPQNQQQQSE PLKCPRCDST 120 NTKFCYYNNY NKSQPRHFCK TCKRHWTKGG TLRNVPVGGG RKNKRLKTSN SSTAAAAPAS 180 TSTTSAIKSS TASGVNNNRL NTFMAVQPQQ QRQDLQLPLA DQKNISNIQF QALSRPPSSL 240 LQQNSINCSN LDGKSFSTSN GVFLGSTLPL PQTQGLQFPF SSSSSSSFDT TRSSISTSFQ 300 SSTIYNYTGE TMEDPTITSV IMPTTSGTFS QPWQVPITSS GMDMTNYWNW DDIDALVSTD 360 LNMPWDDSEI KP*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MLTSHHLPGN FLAFDTLHYP IASKHHTVWL ISKNLIILLF FRTLLLIALT CGSLLEVSEV  60
RYRDMGLSSK QVSSDGLGWS QSLLQAQTLG LPKASPAKRQ QPQNQQQQSE PLKCPRCDST  120
NTKFCYYNNY NKSQPRHFCK TCKRHWTKGG TLRNVPVGGG RKNKRLKTSN SSTAAAAPAS  180
TSTTSAIKSS TASGVNNNRL NTFMAVQPQQ QRQDLQLPLA DQKNISNIQF QALSRPPSSL  240
LQQNSINCSN LDGKSFSTSN GVFLGSTLPL PQTQGLQFPF SSSSSSSFDT TRSSISTSFQ  300
SSTIYNYTGE TMEDPTITSV IMPTTSGTFS QPWQVPITSS GMDMTNYWNW DDIDALVSTD  360
LNMPWDDSEI KP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978739.1	0.0	PREDICTED: dof zinc finger protein DOF1.1 isoform X2
TrEMBL	A0A061GMJ2	0.0	A0A061GMJ2_THECC; Dof-type zinc finger DNA-binding family protein, putative isoform 1
STRING	EOY28319	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.2	3e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029918t1
Entrez Gene	18596891

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]