PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029880t1
Common NameTCM_029880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LSD
Protein Properties Length: 135aa    MW: 14633.5 Da    PI: 5.6192
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029880t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1375.5e-124670125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      Cg+Cr lLsYPrGA+  +C++C tV
  Thecc1EG029880t1 46 CGSCRQLLSYPRGARQAKCSCCETV 70
                      ************************9 PP

2zf-LSD147.33.2e-1584108125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+C +lL+YP+GA+sVRC++C++V
  Thecc1EG029880t1  84 CGSCAVLLMYPFGASSVRCSSCQFV 108
                       ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.9E-164373IPR005735Zinc finger, LSD1-type
PfamPF069435.6E-94670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.0E-1381109IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-1284108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MANREEGEQQ QQQQVEEEEE GPPPGWQSIP PPPQPPPSSE MAQMVCGSCR QLLSYPRGAR  60
QAKCSCCETV NFVLEAHQVG LVKCGSCAVL LMYPFGASSV RCSSCQFVTE IGAHNRRPPW  120
SVQQGQPTPP NAVH*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025633.22e-92PREDICTED: protein LOL2
SwissprotO654262e-41LOL2_ARATH; Protein LOL2
TrEMBLA0A061GEH33e-91A0A061GEH3_THECC; Lsd one like 2
STRINGEOY282554e-92(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-39lsd one like 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]