PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029852t1
Common NameTCM_029852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 227aa    MW: 25513.8 Da    PI: 6.7978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029852t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.3e-1157108255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                       r+  + +Er+RR++++  +++L +l+P+    +s+   s  + L +A +YIk Lq
  Thecc1EG029852t1  57 RTDRKLIERNRRNQMKALYSKLNSLIPHH---NSREsTSLPDQLGEAANYIKRLQ 108
                       778899**********************7...55555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-1353122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.74455107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-755112No hitNo description
Gene3DG3DSA:4.10.280.109.7E-1257121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-757108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-561113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEVQPNFPPD YADMSSSLSN ELYPKTTMIL LERGSCIIRS FASQRITDME HNPNSSRTDR  60
KLIERNRRNQ MKALYSKLNS LIPHHNSRES TSLPDQLGEA ANYIKRLQTN LERMKERKDS  120
LLGVERSMNT SRSSGPRSPQ IMIQEMGSSL VIGLTTCSSS QFIFNETIRI LHEEGAEIVN  180
ASFSVVDDTV FHTIHLTVAE SYAPDYGAAA RISERLQKFV NDIADA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978763.11e-128PREDICTED: transcription factor bHLH36
SwissprotF4JIJ71e-48BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A061GFP31e-166A0A061GFP3_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOY282231e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-51bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]