PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029852t1 | ||||||||
Common Name | TCM_029852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25513.8 Da PI: 6.7978 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.3e-11 | 57 | 108 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 r+ + +Er+RR++++ +++L +l+P+ +s+ s + L +A +YIk Lq Thecc1EG029852t1 57 RTDRKLIERNRRNQMKALYSKLNSLIPHH---NSREsTSLPDQLGEAANYIKRLQ 108 778899**********************7...55555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-13 | 53 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.744 | 55 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.33E-7 | 55 | 112 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.7E-12 | 57 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 57 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-5 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEVQPNFPPD YADMSSSLSN ELYPKTTMIL LERGSCIIRS FASQRITDME HNPNSSRTDR 60 KLIERNRRNQ MKALYSKLNS LIPHHNSRES TSLPDQLGEA ANYIKRLQTN LERMKERKDS 120 LLGVERSMNT SRSSGPRSPQ IMIQEMGSSL VIGLTTCSSS QFIFNETIRI LHEEGAEIVN 180 ASFSVVDDTV FHTIHLTVAE SYAPDYGAAA RISERLQKFV NDIADA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978763.1 | 1e-128 | PREDICTED: transcription factor bHLH36 | ||||
Swissprot | F4JIJ7 | 1e-48 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A061GFP3 | 1e-166 | A0A061GFP3_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOY28223 | 1e-167 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029852t1 |
Entrez Gene | 18596834 |
Publications ? help Back to Top | |||
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