PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029836t1

Common Name

TCM_029836

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 325aa MW: 35129.5 Da PI: 9.8089

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029836t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.1e-38	42	101	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Thecc1EG029836t1 42 HPPQKCPRCESLNTKFCYYNNYSLSQPRYFCKNCRRYWTQGGTLRNVPVGGGCRKGKRTK 101 56789**************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-32	45	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	45	99	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	46	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MQQDRGGGVS DQDMKQNQQQ DRRLKPLTGE NQQPQQQQQQ QHPPQKCPRC ESLNTKFCYY 60 NNYSLSQPRY FCKNCRRYWT QGGTLRNVPV GGGCRKGKRT KTSSSGENSR SQPQIPQQQA 120 QQQNLTTPQS MISSNPMIGA STALRTKESG SLASSAAISS MGSYYPGGGF LSSLAAIQSM 180 NQPQPFNQPR NQALSIGGDL GGSSNLGLLQ GYSVPSFGSQ QHQPIQQTQF FHMGNREKTG 240 NMYPADQEGL IQSSRPAAGS SQQNWHQSFI NSSNPTVSEG GLWSINNNSS STSTAGNTIP 300 SNTSGASSLN PNQWPDLPGY GAPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978744.1	0.0	PREDICTED: dof zinc finger protein DOF5.3
TrEMBL	A0A061GMA5	0.0	A0A061GMA5_THECC; F-box family protein, putative
STRING	EOY28204	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-25	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Thecc1EG029836t1
Entrez Gene	18596818

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]