PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029834t1

Common Name

TCM_029834

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 361aa MW: 39512.9 Da PI: 7.9998

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029834t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	57	117	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Thecc1EG029834t1 57 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 117 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.0E-33	59	115	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	60	115	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	61	115	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	63	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MLSNCEKMVV ISSTTNEWPQ NHIDEKDLMA STARLMEKPS QEQQPQQLQQ QQQQQQQQQA 60 LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRPA 120 SAIDSASPTS GANPNPPSQP QIDVSSSSSH HINPLFYGLA NNPSDMNLPF PRFNSRVSGV 180 ETVTGYDLQP QLNALGLGFS SGIVSSDTGD SDYRNGFNVN PTKQIQDVVT SNPLLSSYSN 240 VFGSSSSSTT TTPTIASLLA STLHQHKFMN GGVKNTQAPN PFQALAPFQD LQMTGNSENG 300 LTMKDVKVEE GQNRMEWNLP CQNQLEQIGL SDPAVYWNTT SVAGAWHDPT NIGSSVTSLI 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MLSNCEKMVV ISSTTNEWPQ NHIDEKDLMA STARLMEKPS QEQQPQQLQQ QQQQQQQQQA  60
LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRPA  120
SAIDSASPTS GANPNPPSQP QIDVSSSSSH HINPLFYGLA NNPSDMNLPF PRFNSRVSGV  180
ETVTGYDLQP QLNALGLGFS SGIVSSDTGD SDYRNGFNVN PTKQIQDVVT SNPLLSSYSN  240
VFGSSSSSTT TTPTIASLLA STLHQHKFMN GGVKNTQAPN PFQALAPFQD LQMTGNSENG  300
LTMKDVKVEE GQNRMEWNLP CQNQLEQIGL SDPAVYWNTT SVAGAWHDPT NIGSSVTSLI  360
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025580.2	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A061GGE9	0.0	A0A061GGE9_THECC; F-box family protein, putative
STRING	EOY28202	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	4e-51	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029834t1
Entrez Gene	18596816

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]