PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029826t2
Common NameTCM_029826
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 785aa    MW: 85921 Da    PI: 6.906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029826t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07241260525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       +C+ffar G+C  G++C+F H
  Thecc1EG029826t2 241 ICDFFAR-GWCIKGSSCRFLH 260
                       6******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.33E-6236260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089236263IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5241260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MPLSTSAVVA RAEKDDERRA TSTTEREINS SDMEIDDNDD DEEEGDLQGS SNRNDASNIM  60
ESKGHNGCLE SGSFSPGKSE TRVPSKSLAF SSLLNEPLKT QKEDICANYE DSKYPISGKQ  120
PAKEKATQQD VVSEKDARVI LQRKAPEDHC EQQSNSKSHS VIGEIHSSVA GKEVVITIPV  180
RYHSGGVNDV KGFKEKSKQM NLQSDDDKRR IKSRSAAPQT STGSLSPGAE LDSGSKRPAL  240
ICDFFARGWC IKGSSCRFLH IKDSGNNPRQ QPEVDVATAD AKGAVQLDEG FDNAAERSSS  300
PGSTDTLPSS VKNKTALSSH FFSERVLPSG HDENQRLHPF HEINKFPLLQ SKDKLMGTSP  360
ASQQFSASID DLGPSKDVRQ NSIGQNLPAD SYTKPASLSD RGSSTFRNSF LPEYRSSLSG  420
SVTSLGITYS ENRSYRVSTW MGSFPFGSSL SACSLGAQKV LDGDREHHTS RLSSLLQSSS  480
PFSRSEPDNF PLNDIARDPL HVTDFRIKIS SDDWEPSVPF RPSFFVTSSI SPPRGQYNPL  540
CDSIDMSNAG KRSLKFSFSS QGPSLLNVAY PPTYGDSAST GPVVTECNGD KKIASCHNRY  600
PESLFNNNCH NSGKDSLTTD ANDGTSAADM QNGTLVKEEI SSVASHVKDI SKANKIDTDL  660
DGRHQRDGSR CKKDLKVDRV REKNEIEVEH KADGDPQKES KAMKHFRAAL VDLIKELLKP  720
TWREGHLNRD AHNTIVKKAV DKVLGTVQPH QIPITFESVK QYLSSSQPKI AKLVQGYVDK  780
YSKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978705.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_017978706.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A061GFM00.0A0A061GFM0_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1
STRINGEOY281870.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-54C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]