PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029826t2 | ||||||||
Common Name | TCM_029826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 785aa MW: 85921 Da PI: 6.906 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.1 | 2.7e-07 | 241 | 260 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H Thecc1EG029826t2 241 ICDFFAR-GWCIKGSSCRFLH 260 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.33E-6 | 236 | 260 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-5 | 241 | 260 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MPLSTSAVVA RAEKDDERRA TSTTEREINS SDMEIDDNDD DEEEGDLQGS SNRNDASNIM 60 ESKGHNGCLE SGSFSPGKSE TRVPSKSLAF SSLLNEPLKT QKEDICANYE DSKYPISGKQ 120 PAKEKATQQD VVSEKDARVI LQRKAPEDHC EQQSNSKSHS VIGEIHSSVA GKEVVITIPV 180 RYHSGGVNDV KGFKEKSKQM NLQSDDDKRR IKSRSAAPQT STGSLSPGAE LDSGSKRPAL 240 ICDFFARGWC IKGSSCRFLH IKDSGNNPRQ QPEVDVATAD AKGAVQLDEG FDNAAERSSS 300 PGSTDTLPSS VKNKTALSSH FFSERVLPSG HDENQRLHPF HEINKFPLLQ SKDKLMGTSP 360 ASQQFSASID DLGPSKDVRQ NSIGQNLPAD SYTKPASLSD RGSSTFRNSF LPEYRSSLSG 420 SVTSLGITYS ENRSYRVSTW MGSFPFGSSL SACSLGAQKV LDGDREHHTS RLSSLLQSSS 480 PFSRSEPDNF PLNDIARDPL HVTDFRIKIS SDDWEPSVPF RPSFFVTSSI SPPRGQYNPL 540 CDSIDMSNAG KRSLKFSFSS QGPSLLNVAY PPTYGDSAST GPVVTECNGD KKIASCHNRY 600 PESLFNNNCH NSGKDSLTTD ANDGTSAADM QNGTLVKEEI SSVASHVKDI SKANKIDTDL 660 DGRHQRDGSR CKKDLKVDRV REKNEIEVEH KADGDPQKES KAMKHFRAAL VDLIKELLKP 720 TWREGHLNRD AHNTIVKKAV DKVLGTVQPH QIPITFESVK QYLSSSQPKI AKLVQGYVDK 780 YSKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978705.1 | 0.0 | PREDICTED: protein FRIGIDA-ESSENTIAL 1 | ||||
Refseq | XP_017978706.1 | 0.0 | PREDICTED: protein FRIGIDA-ESSENTIAL 1 | ||||
TrEMBL | A0A061GFM0 | 0.0 | A0A061GFM0_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 | ||||
STRING | EOY28187 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029826t2 |
Entrez Gene | 18596808 |
Publications ? help Back to Top | |||
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