PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029820t1 | ||||||||
Common Name | TCM_029820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26697.5 Da PI: 8.2395 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 24 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++ a+++++g+ Thecc1EG029820t1 24 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDTAAREFRGA 74 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.6E-38 | 24 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 24 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.854 | 24 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-30 | 24 | 81 | No hit | No description |
Pfam | PF00847 | 2.5E-13 | 24 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 24 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.0E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAPREKTAVV KGNGNVNGNS KEVHFRGVRK RPWGRYAAEI RDPGKKSRVW LGTFDTAEEA 60 ARAYDTAARE FRGAKAKTNF PLPCENLNNG NNCNDNDNNN NSNNQSPSQS STVESSSREP 120 SLMIYSSPFD LNLGHAAVAG FETPAVRFPF QQVSPVTGVF AAGLPAVASP QLFYFDSFVR 180 PGAVKGQQYQ RMRFDHNDFH ATFNGGVQSD SDSSSVVDLN HHEIKQRPLL NIDLNQPALP 240 EIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 20 | 82 | 1 | 64 | ATERF1 |
3gcc_A | 1e-21 | 20 | 82 | 1 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025558.2 | 1e-180 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A061GEB2 | 1e-180 | A0A061GEB2_THECC; Erf domain protein 9, putative | ||||
STRING | EOY28180 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-27 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029820t1 |
Entrez Gene | 18596802 |
Publications ? help Back to Top | |||
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