PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029805t1

Common Name

TCM_029805

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 1743aa MW: 196561 Da PI: 5.329

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029805t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9.1e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+ L++klgL++rq ++WF+ rR kekk Thecc1EG029805t1 29 PKRQMKTPYQLEALEKAYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-18	7	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-16	17	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.212	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	27	89	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-16	29	84	IPR001356	Homeobox domain
CDD	cd00086	1.73E-13	30	85	No hit	No description
SMART	SM00571	4.2E-22	542	601	IPR018501	DDT domain
PROSITE profile	PS50827	16.486	542	601	IPR018501	DDT domain
Pfam	PF02791	1.0E-16	543	598	IPR018501	DDT domain
Pfam	PF05066	7.4E-15	724	791	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.1E-8	937	981	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-12	1122	1194	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1743 aa Download sequence Send to blast
MDPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL 60 SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLHAGP EPDYGSGSGS 120 GSSPYTDSRK LGGSSSRGMT EDVPTARRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPQK RSGHPYESKA YERHDGRSSK AAVRALHEYQ FLPEHASLRS 240 DAYGQVTQSH FHESPVDGAR ARATSFVHGE EPLPRVHGIQ GHGSRVRVLP QQDKTGIIPT 300 SSQVADDSLA ERESFTNGRL NTQSIGHPVL GSEDSYVLST GQTLNIDADL RNDRKRKSDE 360 NRIAREVEAH ENRIRKELEK LDLKRRKSEE RMRKEMERHA RERRKEEERL VREKQREEER 420 SQREQRREME RREKFLQKEC LRAEKRRQKE ELRREKEAER RRVAMEKATA RKIAKESMDL 480 IEDEQLELME LAAASKGIPS IIHLDHDSLQ NLESFRDSLS LFPPKSVQLK RPFAIQPWID 540 SEENVGNLLM AWRFLITFAD VLRLWPFTLD EFVQAFHDYD SRLLGEIHVA LLKSIIKDIE 600 DVARTPSTGL GMNQYCAANP EGGHPQIVEG AYSWGFDIRN WQRHLNPLTW PEIFRQLAIS 660 AGLGPQLKKR NAAWTFMGDN DEGKGCEDVV STLRNGSAAE NAFVLMREKG LLLPRRSRHR 720 LTPGTVKFAA FHVLSLEGRE GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDAKLF 780 ERIAPSTYCV RPAYRKDPTD AEAILAAARK KIRQFENGFL GGEDADEVER DEVERDEESE 840 CDVDEEPEVD DIATPSNANK DADYPKDEVN TCSGSGKVHV STDALNVPSE FDKDFSSFPP 900 NIMKDANGPS NTGQYVAREE MGTGNPDQQN IEIDESKSGE SWIQGLSEGE YSHLSVEERL 960 NALVALIGIA NEGNSIRAVL EDRLEAANAL KKQMWVEAQL DKSRLKEETM VKMDFPSMMG 1020 IKAEPQLPNS VVEGSQSPFP AAYNKNDEAS PSIPDDQKPL LCSQNVQNDL NSYPAERALV 1080 LQEASMGPDN FSAQQIGHAS KRSRSQLKSY IAHRAEEMYV YRSLPLGQDR RRNRYWQFVA 1140 SASKNDPCSG RIFVELRDGN WRLIDSEEAF DTLLTSLDAR GIRESHLRIM LQKIETSFKE 1200 NVRRNLQCAR AIGRSGSSTE NEVSELDSSP DFPASFDSPS SAICGLNFDA LETLPSFKIQ 1260 LGRNENEKKL ALKRYQDFQR WIWKECYNSS TLCAMKYGKK RCVQLLAVCD VCLRSHIPEE 1320 MHCGYCHQTF GSVNNSFNFS EHEIQCKENR KLDTKDTCTI DYSLPLGISL LKSLCALVEV 1380 SIPPEALESV WIEGRRKMWG RELNASSSVD ELLKILTHLE SAIKRDHLLS NFETTKELLG 1440 SNLQSESDSS VSVLPWIPET TAAVALRLLE LDVSIMCVKQ EKVEPSENKE ARAYIKLPSR 1500 TSLFIKNKEL ELKELDQDEA MKEENFADMS HSKRNSYKRG RGGREQGSGR KWQRRASGSR 1560 YDTGKRSARE KNNLSFRLKQ QGQRTNGRSS GRGRRTVRKR AERRAADNTM VARVADVIKP 1620 KVSDVRDLDE EWRTEKFRVM QMVNPPDSNS AEEESDDNAQ GEGYGQGNWD LDYNGASNGW 1680 NAEAMEASDE DDDAYEDDNG VEQLGEEDSD GDLEISDASD VVANKAGNDD GSDLAVSEDY 1740 SD*

Sequence ? help Back to Top

Protein Sequence Length: 1743 aa Download sequence Send to blast

MDPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL  60
SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLHAGP EPDYGSGSGS  120
GSSPYTDSRK LGGSSSRGMT EDVPTARRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPQK RSGHPYESKA YERHDGRSSK AAVRALHEYQ FLPEHASLRS  240
DAYGQVTQSH FHESPVDGAR ARATSFVHGE EPLPRVHGIQ GHGSRVRVLP QQDKTGIIPT  300
SSQVADDSLA ERESFTNGRL NTQSIGHPVL GSEDSYVLST GQTLNIDADL RNDRKRKSDE  360
NRIAREVEAH ENRIRKELEK LDLKRRKSEE RMRKEMERHA RERRKEEERL VREKQREEER  420
SQREQRREME RREKFLQKEC LRAEKRRQKE ELRREKEAER RRVAMEKATA RKIAKESMDL  480
IEDEQLELME LAAASKGIPS IIHLDHDSLQ NLESFRDSLS LFPPKSVQLK RPFAIQPWID  540
SEENVGNLLM AWRFLITFAD VLRLWPFTLD EFVQAFHDYD SRLLGEIHVA LLKSIIKDIE  600
DVARTPSTGL GMNQYCAANP EGGHPQIVEG AYSWGFDIRN WQRHLNPLTW PEIFRQLAIS  660
AGLGPQLKKR NAAWTFMGDN DEGKGCEDVV STLRNGSAAE NAFVLMREKG LLLPRRSRHR  720
LTPGTVKFAA FHVLSLEGRE GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDAKLF  780
ERIAPSTYCV RPAYRKDPTD AEAILAAARK KIRQFENGFL GGEDADEVER DEVERDEESE  840
CDVDEEPEVD DIATPSNANK DADYPKDEVN TCSGSGKVHV STDALNVPSE FDKDFSSFPP  900
NIMKDANGPS NTGQYVAREE MGTGNPDQQN IEIDESKSGE SWIQGLSEGE YSHLSVEERL  960
NALVALIGIA NEGNSIRAVL EDRLEAANAL KKQMWVEAQL DKSRLKEETM VKMDFPSMMG  1020
IKAEPQLPNS VVEGSQSPFP AAYNKNDEAS PSIPDDQKPL LCSQNVQNDL NSYPAERALV  1080
LQEASMGPDN FSAQQIGHAS KRSRSQLKSY IAHRAEEMYV YRSLPLGQDR RRNRYWQFVA  1140
SASKNDPCSG RIFVELRDGN WRLIDSEEAF DTLLTSLDAR GIRESHLRIM LQKIETSFKE  1200
NVRRNLQCAR AIGRSGSSTE NEVSELDSSP DFPASFDSPS SAICGLNFDA LETLPSFKIQ  1260
LGRNENEKKL ALKRYQDFQR WIWKECYNSS TLCAMKYGKK RCVQLLAVCD VCLRSHIPEE  1320
MHCGYCHQTF GSVNNSFNFS EHEIQCKENR KLDTKDTCTI DYSLPLGISL LKSLCALVEV  1380
SIPPEALESV WIEGRRKMWG RELNASSSVD ELLKILTHLE SAIKRDHLLS NFETTKELLG  1440
SNLQSESDSS VSVLPWIPET TAAVALRLLE LDVSIMCVKQ EKVEPSENKE ARAYIKLPSR  1500
TSLFIKNKEL ELKELDQDEA MKEENFADMS HSKRNSYKRG RGGREQGSGR KWQRRASGSR  1560
YDTGKRSARE KNNLSFRLKQ QGQRTNGRSS GRGRRTVRKR AERRAADNTM VARVADVIKP  1620
KVSDVRDLDE EWRTEKFRVM QMVNPPDSNS AEEESDDNAQ GEGYGQGNWD LDYNGASNGW  1680
NAEAMEASDE DDDAYEDDNG VEQLGEEDSD GDLEISDASD VVANKAGNDD GSDLAVSEDY  1740
SD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKE
2	383	404	KRRKSEERMRKEMERHARERRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ566576	3e-78	AJ566576.1 Theobroma cacao microsatellite, clone mTcCIR255.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025543.2	0.0	PREDICTED: homeobox-DDT domain protein RLT1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A061GFK3	0.0	A0A061GFK3_THECC; Homeodomain-like transcriptional regulator, putative isoform 1
STRING	EOY28163	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Thecc1EG029805t1
Entrez Gene	18596787

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]