PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029798t1

Common Name

TCM_029798

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 314aa MW: 35338.8 Da PI: 8.9056

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029798t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.3	3.9e-33	62	202	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ e+L++kv ++ ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Thecc1EG029798t1 62 LPAGVKFDPTDQEIL-EHLEAKVISDMrklhplIDEFIPtLEGEnGICYTHPERLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgs 152 799*********9.999999887774665432222222333336******.555666777**************744446555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Thecc1EG029798t1 153 ETRWHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 202 788********.9*********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-37	56	221	IPR003441	NAC domain
PROSITE profile	PS51005	33.64	62	221	IPR003441	NAC domain
Pfam	PF02365	3.1E-15	63	202	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MTWCNNSDDD RALQLVTAAD STKEPASVSD TKTDDIRIII CPSCGHNIPY QDQAGIHDLP 60 GLPAGVKFDP TDQEILEHLE AKVISDMRKL HPLIDEFIPT LEGENGICYT HPERLPGVSK 120 DGQIRHFFHR PSKAYTTGTR KRRKVHTDED GSETRWHKTG KTRPVLVGGA VKGFKKILVL 180 YTNYGRQRKP EKTNWVMHQY HLGNNEEEKD GELVASKVFY QTQPRQCGPS SVKDTLDRKL 240 KNRSRHDKSP IAKSSSTAFV HEYFNPPFIP FDHGSHNRES PPPLIPNLVV QGDGSSFIRL 300 ASDTSKGRLE RKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847204	0.0	KC847204.1 Gossypium hirsutum NAC domain protein NAC27 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025530.2	0.0	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	1e-123	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A061GGB9	0.0	A0A061GGB9_THECC; NAC domain containing protein 73
STRING	EOY28152	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-125	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Thecc1EG029798t1
Entrez Gene	18596780

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]