PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029773t1

Common Name

TCM_029773

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ERF

Protein Properties

Length: 185aa MW: 20488.7 Da PI: 9.0736

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029773t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.2	1.1e-19	80	131	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + ng +r++lg+f taeeAa a+++a+ +++g+ Thecc1EG029773t1 80 HYRGVRRRP-WGKYAAEIRDSTRNG--ARVWLGTFVTAEEAALAYDRAAFRMRGA 131 8******.******44465..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.0E-31	79	139	IPR001471	AP2/ERF domain
CDD	cd00018	4.00E-30	79	139	No hit	No description
SMART	SM00380	1.1E-35	80	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.66E-23	80	140	IPR016177	DNA-binding domain
Pfam	PF00847	3.4E-14	80	130	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.314	80	138	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-11	81	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-11	104	120	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MTSHTEEKAW KESMVQISHS ENQLPFNEND SQDMFIYQVL NEANPHAVAI NNFHQFHVPP 60 RNQSSATNML EPSRTIAKKH YRGVRRRPWG KYAAEIRDST RNGARVWLGT FVTAEEAALA 120 YDRAAFRMRG AKALLNFPAE VVAASSVQRL RPNLSSTSSE KTNPDSGSSC STLSISESES 180 STTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-33	79	141	4	66	ATERF1
3gcc_A	5e-33	79	141	4	66	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269\|PubMed:10607299, ECO:0000269\|PubMed:11768541, ECO:0000269\|PubMed:11971137}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269\|PubMed:10607299, ECO:0000269\|PubMed:9878629}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025492.2	1e-136	PREDICTED: pathogenesis-related genes transcriptional activator PTI5
Swissprot	O04681	2e-53	PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBL	A0A061GM02	1e-134	A0A061GM02_THECC; Ethylene responsive element binding factor 1
STRING	EOY28114	1e-135	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	7e-32	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Thecc1EG029773t1
Entrez Gene	18596757

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]