PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029772t1
Common NameTCM_029772
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 282aa    MW: 31421 Da    PI: 5.2983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029772t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20122172255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd      k +r++lg+f+taeeAa a+++a+++++g
  Thecc1EG029772t1 122 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAALAYDKAALRIRG 172
                       7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-32121181IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-24122182IPR016177DNA-binding domain
PfamPF008474.1E-15122172IPR001471AP2/ERF domain
SMARTSM003808.5E-38122186IPR001471AP2/ERF domain
CDDcd000186.79E-30122180No hitNo description
PROSITE profilePS5103224.092122180IPR001471AP2/ERF domain
PRINTSPR003672.6E-11123134IPR001471AP2/ERF domain
PRINTSPR003672.6E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAVESSQHAA SESILENVWA NFIGGEEADG ATSKITTKSS KSWQELPSLD GRDGSMEILQ  60
RLPSLGRWIS MGADAWEDLL DGIIPSGNIE QSCNDNTSKS ISVSTRGPKV NSVRVEKVAT  120
RHYRGVRRRP WGKYAAEIRD SSRKGARVWL GTFDTAEEAA LAYDKAALRI RGPKAYLNFP  180
LETVAKAMGI DYTEPDFNAC LSEKYQGKDS ASTYSGFNKN FRNHRKRESR DWEKNGDQVV  240
MVEQPRLKRM ASVEEVLEDG YDVLEFQDLG SDYLESLLSS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-28121183466ATERF1
3gcc_A6e-28121183466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025491.20.0PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A061GFB60.0A0A061GFB6_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY281130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-42ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]