PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029711t2

Common Name

TCM_029711

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 269aa MW: 29587.7 Da PI: 8.8718

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029711t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	81	127	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riN +++Lr llP + +K++Ka+ L ++++ +k+L Thecc1EG029711t2 81 KSHSEAEKRRRERINAHLDTLRGLLPCR-----EKMDKATLLGEVIRQVKEL 127 58***********************9.....8*********9988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.154	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-9	81	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.79E-10	81	129	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-11	82	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-12	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-9	84	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MFRMAAYSFN NNFSSGNCYS GLFNPLSRDM GPRNGSSHGG SLSVLVSQTL VLDSEKGELV 60 KAPVKVGKKS VSEEKVIAAL KSHSEAEKRR RERINAHLDT LRGLLPCREK MDKATLLGEV 120 IRQVKELKKN ATEASKGFLV PMDDDEVRVE PCEDEANGIL LFKASICCDY RPELLTDLRR 180 ALDALPIKMV KAETSTLGSR LKNDFVFAGC RTAHADEAEA RRFLACSIHQ ALNSVLEKAS 240 ASPEYSPSSI FPNKRRRMSH FDSSSSSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025402.1	0.0	PREDICTED: putative transcription factor bHLH107
TrEMBL	A0A061GLQ3	0.0	A0A061GLQ3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRING	EOY28023	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	1e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029711t2
Entrez Gene	18596703

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]