PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029684t1

Common Name

TCM_029684

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 407aa MW: 46544.1 Da PI: 8.2389

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029684t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.9e-31	87	140	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Thecc1EG029684t1 87 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 140 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-29	83	141	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.602	83	143	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-14	86	141	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-22	87	142	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	88	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MIEGIENHDE EKRVESEEQA ENLSAVSSPK CSSFDLNEEA SSEEDYDIDI AKENEVSVEE 60 DEKRTEGSSS NNNERRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQE RATPKLVLQL 120 MNVRGLSIAH VKSHLQMYRS KKLDEAGQVL RQANRQIQGR DEFRSMLQQV SSSPHQHFRM 180 ENGGIVLARG SLENNITRSL YKSPFYQRPL DFKPSIPRHQ PTSFISKARG QENGFPKPTA 240 LHNQGQSNQI HTMDTAMRVG PMRPGRFLEE KRWHPFELIS NRWRVNGNMT KDTFATTCSQ 300 SQSPYFCTRP SSDGESYSTR PAAGNLGTKK MIGQFVSNKH DSLSKFSSCR PEFEAPLWLE 360 LKQDKLLKDR EWLPDLQLRL SQRIGIDDEK THCKGTEEIS TQLSLS*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MIEGIENHDE EKRVESEEQA ENLSAVSSPK CSSFDLNEEA SSEEDYDIDI AKENEVSVEE  60
DEKRTEGSSS NNNERRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQE RATPKLVLQL  120
MNVRGLSIAH VKSHLQMYRS KKLDEAGQVL RQANRQIQGR DEFRSMLQQV SSSPHQHFRM  180
ENGGIVLARG SLENNITRSL YKSPFYQRPL DFKPSIPRHQ PTSFISKARG QENGFPKPTA  240
LHNQGQSNQI HTMDTAMRVG PMRPGRFLEE KRWHPFELIS NRWRVNGNMT KDTFATTCSQ  300
SQSPYFCTRP SSDGESYSTR PAAGNLGTKK MIGQFVSNKH DSLSKFSSCR PEFEAPLWLE  360
LKQDKLLKDR EWLPDLQLRL SQRIGIDDEK THCKGTEEIS TQLSLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	88	142	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978413.1	0.0	PREDICTED: myb-related protein 2
TrEMBL	A0A061GEX7	0.0	A0A061GEX7_THECC; Myb-like HTH transcriptional regulator family protein, putative
STRING	EOY27983	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029684t1
Entrez Gene	18596676

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]