PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029596t3
Common NameTCM_029596
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27744.6 Da    PI: 9.8642
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029596t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Thecc1EG029596t3 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                      79***********************************************8 PP
2K-box115.16.8e-38921884100
             K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       s++ s++ea+a+ +qqe+akL+ +i nLq+++Rh+lGe+L+ L +k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+
  Thecc1EG029596t3  92 SNTGSVSEANAQFYQQEAAKLRVQIGNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRA 184
                       444459*************************************************************************************** PP

             K-box  97 klee 100
                       k++e
  Thecc1EG029596t3 185 KIAE 188
                       *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321676IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-331789IPR002100Transcription factor, MADS-box
CDDcd002653.02E-461793No hitNo description
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-331838IPR002100Transcription factor, MADS-box
PfamPF003198.9E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-335374IPR002100Transcription factor, MADS-box
PfamPF014868.6E-28100186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.178102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVYPNESCET SPQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKAT IERYKKTCAD SSNTGSVSEA NAQFYQQEAA KLRVQIGNLQ  120
NSNRHMLGES LSALPMKDLR SLENRLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAENE RKQQNINLMP GGSNFEIMHS QPFDSRNYFQ VNALQPANHY PHQDQMALQL  240
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-211684169Myocyte-specific enhancer factor 2B
1tqe_Q4e-211684169Myocyte-specific enhancer factor 2B
1tqe_R4e-211684169Myocyte-specific enhancer factor 2B
1tqe_S4e-211684169Myocyte-specific enhancer factor 2B
5f28_A5e-211684169MEF2C
5f28_B5e-211684169MEF2C
5f28_C5e-211684169MEF2C
5f28_D5e-211684169MEF2C
6c9l_A4e-211684169Myocyte-specific enhancer factor 2B
6c9l_B4e-211684169Myocyte-specific enhancer factor 2B
6c9l_C4e-211684169Myocyte-specific enhancer factor 2B
6c9l_D4e-211684169Myocyte-specific enhancer factor 2B
6c9l_E4e-211684169Myocyte-specific enhancer factor 2B
6c9l_F4e-211684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1571630.0DQ157163.1 Theobroma cacao AGAMOUS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025252.11e-180PREDICTED: floral homeotic protein AGAMOUS
RefseqXP_017978806.11e-180PREDICTED: floral homeotic protein AGAMOUS
RefseqXP_017978807.11e-180PREDICTED: floral homeotic protein AGAMOUS
SwissprotQ408721e-136AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A061GFD31e-178A0A061GFD3_THECC; K-box region and MADS-box transcription factor family protein isoform 1
TrEMBLQ20JJ41e-178Q20JJ4_THECC; AGAMOUS-like protein
STRINGEOY278721e-179(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-129MIKC_MADS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]