PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029596t1
Common NameTCM_029596
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 295aa    MW: 34012.8 Da    PI: 10.2112
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029596t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-3177126150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Thecc1EG029596t1  77 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 126
                       79***********************************************8 PP
2K-box114.51e-371452414100
             K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       s++ s++ea+a+ +qqe+akL+ +i nLq+++Rh+lGe+L+ L +k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+
  Thecc1EG029596t1 145 SNTGSVSEANAQFYQQEAAKLRVQIGNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRA 237
                       444459*************************************************************************************** PP

             K-box  97 klee 100
                       k++e
  Thecc1EG029596t1 238 KIAE 241
                       *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.13269129IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-4269128IPR002100Transcription factor, MADS-box
CDDcd002652.28E-4570146No hitNo description
SuperFamilySSF554554.71E-3370142IPR002100Transcription factor, MADS-box
PROSITE patternPS00350071125IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-337191IPR002100Transcription factor, MADS-box
PfamPF003191.2E-2678125IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-3391106IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-33106127IPR002100Transcription factor, MADS-box
PfamPF014861.3E-27153239IPR002487Transcription factor, K-box
PROSITE profilePS5129715.178155245IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTFNAKDLDD AKTFLGRTKT KSGKARRRND HRWMERTKDQ ISCDRFLIQT LAIMVYPNES  60
CETSPQKKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSSRG  120
RLYEYANNSV KATIERYKKT CADSSNTGSV SEANAQFYQQ EAAKLRVQIG NLQNSNRHML  180
GESLSALPMK DLRSLENRLE KGISRIRSKK NELLFAEIEY MQKREIDLHN NNQLLRAKIA  240
ENERKQQNIN LMPGGSNFEI MHSQPFDSRN YFQVNALQPA NHYPHQDQMA LQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-2069137169Myocyte-specific enhancer factor 2B
1tqe_Q1e-2069137169Myocyte-specific enhancer factor 2B
1tqe_R1e-2069137169Myocyte-specific enhancer factor 2B
1tqe_S1e-2069137169Myocyte-specific enhancer factor 2B
6c9l_A1e-2069137169Myocyte-specific enhancer factor 2B
6c9l_B1e-2069137169Myocyte-specific enhancer factor 2B
6c9l_C1e-2069137169Myocyte-specific enhancer factor 2B
6c9l_D1e-2069137169Myocyte-specific enhancer factor 2B
6c9l_E1e-2069137169Myocyte-specific enhancer factor 2B
6c9l_F1e-2069137169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1571630.0DQ157163.1 Theobroma cacao AGAMOUS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025252.11e-180PREDICTED: floral homeotic protein AGAMOUS
RefseqXP_017978806.11e-180PREDICTED: floral homeotic protein AGAMOUS
RefseqXP_017978807.11e-180PREDICTED: floral homeotic protein AGAMOUS
SwissprotQ408721e-135AG_PANGI; Floral homeotic protein AGAMOUS
SwissprotQ408851e-135AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A061GFD30.0A0A061GFD3_THECC; K-box region and MADS-box transcription factor family protein isoform 1
STRINGEOY278720.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61812237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-128MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]