PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG029470t2 | ||||||||
Common Name | TCM_029470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 314aa MW: 33529.1 Da PI: 6.1562 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 18 | 39 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k+F++ L H+r H Thecc1EG029470t2 18 SCFYCNKVFNNYRALGGHLRIH 39 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.492 | 17 | 44 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.4E-5 | 18 | 44 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MNFLLAREDA EKHAGTKSCF YCNKVFNNYR ALGGHLRIHQ EDKTSRTLNY PGRSSNSMDI 60 TRNPPVLLPN SQQNSSGGGN NPTPFSRAPP AFDFSRMFYS NEINQASRSK YTGSNPGVSQ 120 TQFIMSPDFS YGCGSGATYH SLASRAFAPA GANAVMSPAA FASSGSVVAA GFPIDSSLYL 180 GTNGVCQFNT DEFRISRDGL PPSSGDALQN VQGYNFSPHP CSSVDKGGQY DGRSLLMCEE 240 GKRPYLADGS GGADVMNASK KPKIAPTEHV EPKNPQKKEL SLFMDVDDSI SASETCCGAE 300 EEGPVDVDLS LHL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017979374.1 | 0.0 | PREDICTED: uncharacterized protein LOC18596489 isoform X1 | ||||
Refseq | XP_017979375.1 | 0.0 | PREDICTED: uncharacterized protein LOC18596489 isoform X1 | ||||
Refseq | XP_017979376.1 | 0.0 | PREDICTED: uncharacterized protein LOC18596489 isoform X1 | ||||
TrEMBL | A0A061GE70 | 0.0 | A0A061GE70_THECC; Uncharacterized protein isoform 2 | ||||
STRING | EOY27683 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20644 | 2 | 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG029470t2 |
Entrez Gene | 18596489 |
Publications ? help Back to Top | |||
---|---|---|---|
|