PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029470t1

Common Name

TCM_029470

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 310aa MW: 33017.6 Da PI: 6.1562

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029470t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	18	39	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k+F++ L H+r H Thecc1EG029470t1 18 SCFYCNKVFNNYRALGGHLRIH 39 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.492	17	44	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.2E-5	18	44	No hit	No description
PROSITE pattern	PS00028	0	19	39	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MNFLLAREDA EKHAGTKSCF YCNKVFNNYR ALGGHLRIHQ EDKTSRTLNY PGRSSNSMDI 60 TRNPPVLLPN SQQNSSGGGN NPTPFSRAPP AFDFSRMFYS NEINQASRSK YTGSNPGVSQ 120 TQFIMSPDFS YGCGSGATYH SLASRAFAPA GANAVMSPAA FASSGSVVAA GFPIDSSLYL 180 GTNGVCQFNT DEFRISRDGL PPSSGDALQN VQGPHPCSSV DKGGQYDGRS LLMCEEGKRP 240 YLADGSGGAD VMNASKKPKI APTEHVEPKN PQKKELSLFM DVDDSISASE TCCGAEEEGP 300 VDVDLSLHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025060.2	0.0	PREDICTED: uncharacterized protein LOC18596489 isoform X2
TrEMBL	A0A061GEZ2	0.0	A0A061GEZ2_THECC; Uncharacterized protein isoform 1
STRING	EOY27683	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG029470t1
Entrez Gene	18596489

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]