PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029442t1
Common NameTCM_029442
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 468aa    MW: 50429.8 Da    PI: 7.5672
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029442t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.1e-38842402134
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssas 71 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       +++sa+
  Thecc1EG029442t1  84 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLnssfpdtpkqlsdekrasggneqGFDSAE 176
                       689*************************************************************88888777777777666666655555553 PP

               TCP  72 ec.eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                        +  +++ ++ ++n+s++ + +++a+s+ s++s +s l+l++ e r kar+rarer ++++ +++
  Thecc1EG029442t1 177 -VeLDGDPNNYQQNQSQHLSLSKSACSSTSETSRNSGLSLSRsEIRVKARERARERAAKEKEKEQ 240
                       .24666777777777777899999999***************999**********7766665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4185238IPR005333Transcription factor, TCP
PROSITE profilePS5136931.10586144IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.138218236IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEVEEIQTQA CKFSRVGNGR NDSSKIGQKV SDNYPDDEED GELNKRAGAN GGGGGGGGGA  60
DTAGTNRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVTT AIQFYDLQDR  120
LGYDQPSKAV EWLIKAASDA IAELPSLNSS FPDTPKQLSD EKRASGGNEQ GFDSAEVELD  180
GDPNNYQQNQ SQHLSLSKSA CSSTSETSRN SGLSLSRSEI RVKARERARE RAAKEKEKEQ  240
ESRIAHHQNV NPISQNSSFT ELLTGGIGSV GNNNASPTAS AHQNPNGEPD FFHKANTARQ  300
WPGTPMDYFT SGLLAPSSSS RSHHSSGFPG QIQLGNSLPQ SISISPFNVS GENHQELQHF  360
SFVPNPDHLI PVATTQPGPG GDYNLNFTIS SGLAGFNRGT LQSNSPSFSP HLLQRFSSID  420
GSSPFYIGTP PVENHHHHQF PAGLDGRLQL CYGDGSRSSD QKGKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2491145155Putative transcription factor PCF6
5zkt_B7e-2491145155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025030.20.0PREDICTED: transcription factor TCP2
RefseqXP_017978880.10.0PREDICTED: transcription factor TCP2
RefseqXP_017978881.10.0PREDICTED: transcription factor TCP2
SwissprotQ93V439e-82TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A061GDP30.0A0A061GDP3_THECC; Teosinte branched 1, putative isoform 1
STRINGEOY276510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-60TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]