PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029321t1

Common Name

TCM_029321

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 294aa MW: 33770.2 Da PI: 8.9793

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029321t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.8	1.9e-48	19	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l pGfrFhPtd+elv +yLk+kve+k +++ + ik+vdiyk++PwdLpk k+++ +eke+yfF++r +ky+++ r+nr+t+sg+Wkatg dk Thecc1EG029321t1 19 LLPGFRFHPTDQELVGFYLKRKVEKKLFSI-DLIKHVDIYKYDPWDLPKvsKLSTvTEKELYFFCRRGRKYRNSIRPNRVTSSGFWKATGIDK 110 579*************************.99***********5453333477899**************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s + +glkk+Lv+y+g+a kg+ktdW+mhe+rl Thecc1EG029321t1 111 PIYSVgeFHGCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 150 8443345*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-52	16	180	IPR003441	NAC domain
PROSITE profile	PS51005	51.213	19	180	IPR003441	NAC domain
Pfam	PF02365	7.6E-25	21	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEVEKMISSG NNEDDEDVLL PGFRFHPTDQ ELVGFYLKRK VEKKLFSIDL IKHVDIYKYD 60 PWDLPKVSKL STVTEKELYF FCRRGRKYRN SIRPNRVTSS GFWKATGIDK PIYSVGEFHG 120 CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PVGQNPSLSN TKKDNLPEAE VWTLCRIFKR 180 DVSYRKYALD WQSNKNPSKQ NTTASGSRTC SIESDNSVEV KSFGVLDEKE IERKLANDHL 240 LGRTQFFAGT TQVPSYLSFS NPNGGEFFGQ QNWDELRPVV DYTLGTSLLY SDW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	19	186	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	19	186	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	19	186	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	19	186	17	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-45	19	186	17	171	NAC domain-containing protein 19
4dul_B	2e-45	19	186	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024860.2	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	4e-88	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A061GE93	0.0	A0A061GE93_THECC; NAC domain containing protein 42, putative
STRING	EOY27482	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-90	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Thecc1EG029321t1
Entrez Gene	18596371

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]