PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029192t1
Common NameTCM_029192
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 1013aa    MW: 113956 Da    PI: 9.1557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029192t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-07973993425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        +Cr++a+ G C yG++CkF H
  Thecc1EG029192t1 973 QPCRYHAQ-GRCYYGENCKFLH 993
                       69**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS51349106.5761358IPR012133Alpha-hydroxy acid dehydrogenase, FMN-dependent
Gene3DG3DSA:3.20.20.702.3E-1426354IPR013785Aldolase-type TIM barrel
SuperFamilySSF513953.91E-986350No hitNo description
CDDcd028091.43E-15511350No hitNo description
PfamPF010702.9E-12715351IPR000262FMN-dependent dehydrogenase
PROSITE patternPS005570251257IPR008259FMN-dependent alpha-hydroxy acid dehydrogenase, active site
SuperFamilySSF689061.32E-7511557No hitNo description
Gene3DG3DSA:1.10.720.307.3E-9511557IPR003034SAP domain
PfamPF020372.1E-9522556IPR003034SAP domain
SMARTSM005135.2E-4522556IPR003034SAP domain
PROSITE profilePS5080010.306522556IPR003034SAP domain
PROSITE profilePS5010315.122969996IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036970995IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6972994IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4973993IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-6973998IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MAAEPVNVNG FRELARQALP KMYYDFFAGG AEDQYTLKEN EEAFHRITIQ PRVLLDVSSI  60
DLSTTVLGYN ISMPVMIAPT SRHKLANPSG EIATARAASA CNTIMVLSIS STCTLEEVAA  120
CCNAVRFFQL YVYKRRDISA KLVQRAENNG YKAIVVTGDS PRHGRREADI KNKIIVPELK  180
NLEGLLSTNI VTDGGSNLDA LVNWTRDPSF CWEDIGWLKS ITKLPILIKG VLTQEDAMKA  240
LEVGVDAIIV SNHGARQLDY SPPTISVLEE VVHAVDGKVP VFLDGGVRRG TDIFKAMALG  300
AQAVLVGRPV IYGLAAKGEY GVRRVLEMLK DELELAMSLS GCSSVKEITR MELDDHGKRQ  360
NYQNSYVKRL RQSVLMPSIE ITPSDTDIGR LLRSMICSLP AASALCVIGS PLVASTCSSM  420
AISDSDQESS KDYNEGFEEE DYSSNHGSDP DYDSGADRSY SIEEETRAKL QNFSIKKKSR  480
AGVAKDFDLS IKKDPEEMEM NFPEVDDKSY EYVQKIVKAG KLEKLKVDQC KVYLKKNGLR  540
LSGRKDMLIQ RIKEHLEILN GGGEKKYPLS SFILNCKGDA CTGDVVMFEQ NVYEMFNIAS  600
RSASGPPCGT RIVAGRIVKE SYGAAKQQHT FTIEVLWSKG EKPLPPLHPL LIKGRNLYRL  660
KTLRQKWEDE GERQKALMEK HSRGSLARSD REVRILEKER REMLRANRIF KKDERNKTQS  720
QLTSTTIEIR PQQLGSSSYS GIVAPQHQQS GLNVVAEKLT SQTHGSGSVF DLEKPPIMSQ  780
QSGFLAEPQQ LANQSKQSGL SVTPREKRIQ LPEQSGFSPN FKAKSFQSEY KNVHVPQQLA  840
NQPKQSGLSV APREKRIQLP EQSGFSPNFK ARSFQSEYKN VHVWEGYQNQ IPRYSVQSSG  900
IPEVQLQKGD KFHIDYRKTN FHMNKYQNSI NDKSRRSGMS KLLETSYHRH QLKSMNNCHP  960
ETPPQRRGFL SQQPCRYHAQ GRCYYGENCK FLHETRELHG AEERRFWRYG HY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gyl_A1e-13643502351GLYCOLATE OXIDASE
1gyl_B1e-13643502351GLYCOLATE OXIDASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978808.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1
TrEMBLA0A061GBT40.0A0A061GBT4_THECC; Aldolase-type TIM barrel family protein
STRINGEOY273250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29033
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]