PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029115t1
Common NameTCM_029115
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 660aa    MW: 72500.7 Da    PI: 7.8188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029115t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09545593348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E  +lvd+v+++G g+W+ I r        Rt  ++k++w+++l
  Thecc1EG029115t1 545 AWTLSEVMKLVDGVAKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 593
                       7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.225538597IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-13539600IPR009057Homeodomain-like
SMARTSM007179.9E-10542595IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-16544603IPR009057Homeodomain-like
CDDcd116603.99E-19544594No hitNo description
PfamPF002493.9E-7545593IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
METVVLVEGS NEGKFEETGL EKNNSALSSP KHVADPVVYK LVRVEGDGRL VPATDDELME  60
VEGLLENEKR EIHIVADTGQ ALGCTSNEVS SSGIQLESSE GLSQSENTEA DAEKLSARLE  120
YIEEMLHKVK HEERLRLSCR SPDHSSAYMN VDSHCSEQHD KLLGIDQKLQ SQIPLQETVL  180
SGTQCMSDNH VTQSGSVGER SKPLDELIEG GSSTSAGCIS SKPDFSKLKG EICLDNLSIK  240
ELHEVFKATF GRDTTVKDKQ WLKRRIAMGL TNSCDVSTTT FVIKDNKLVK KVKEDSCNNV  300
DGATSEDHPV VGVENHEDLL NSLSSQIDEH QTTSGMRLGS NSHENTYSED LAAEQRAAKR  360
VRKPTRRYIE ELSKEESKEY SGRLIPSAKN IGIRPMALKS HARPARNGSL DGRTIITRLD  420
SLGGSGIQVP CVYRVRRSRP RKNVMALLKF HPSGMGMTTT FVKKGLDVHS SQMDNGSGNK  480
VLEARSTPEQ TLQQFVAEPK KEKPAAELGQ HMGLKHVNLS GDSSDDNVVT VPTAKGGTRR  540
KHHRAWTLSE VMKLVDGVAK YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLKASFAQT  600
PVDKGVNSRK HPSMPIPAPI LLRVRELAEI QSQVPPNLSA SKLAACGGRS VNETRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435441RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978819.10.0PREDICTED: uncharacterized protein LOC18596205 isoform X1
TrEMBLA0A061GDL30.0A0A061GDL3_THECC; TRF-like 3, putative isoform 1
STRINGEOY272220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-133TRF-like 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]