PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029103t2

Common Name

TCM_029103

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YA

Protein Properties

Length: 341aa MW: 37059.1 Da PI: 8.0367

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029103t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102	5.7e-32	186	242	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+Rg+gGrF Thecc1EG029103t2 186 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-IKARKPYLHESRHLHALKRARGNGGRF 242 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.1E-37	184	245	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.82	185	245	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.1E-26	187	242	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-22	188	210	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	190	210	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.0E-22	219	242	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MQNLHKKDSG VSSHSTCTYV VGCSSWGNST ETHVQQSSVS ESLSLKMGVL PQHFQHTKQL 60 SFQFQDQDSS STQSTGQSYP EAASAGDSNI YGQSLISASS GGNETHGSLF GGHAKLASSM 120 GTQDCVFPPS RVDYSKSTAH IPLHYAEPYF GGAVAAAYGL QAVIHHPHMM AMVPARVPLP 180 LDLTEDEPIY VNAKQYRAIL RRRQFRAKLE AQNKLIKARK PYLHESRHLH ALKRARGNGG 240 RFLNTKQFQE SEHIPSSHGL DMSRSTQLDL SAKISVSEVH QLENYKDAAS TTSCSDITSA 300 SNSDEMFQQP DFRFSGYPSH NGGAMQGHGG GNLHHLSGLC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	186	254	2	69	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024572.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X2
Swissprot	Q93ZH2	8e-92	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A061GJG8	0.0	A0A061GJG8_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 2
STRING	EOY27193	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	9e-78	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Thecc1EG029103t2
Entrez Gene	18596194

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]