PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029103t1
Common NameTCM_029103
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NF-YA
Protein Properties Length: 342aa    MW: 37187.2 Da    PI: 8.0367
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029103t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1025.7e-32187243158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       dep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+Rg+gGrF
  Thecc1EG029103t1 187 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-IKARKPYLHESRHLHALKRARGNGGRF 243
                       79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-37185246IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.82186246IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.1E-26188243IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-22189211IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860191211IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-22220243IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQNLHKKDSG VSSHSTCTYV VGCSSWGNST ETHVQQSSVS ESLSLKMGVL PQHFQHTKQL  60
SFQFQDQDSS STQSTGQSYP EAASAGDSNI YGQSLISASS GGNETHGSLF GGHAKLASSM  120
GTQDCVFPPS RVDYSKSTAH IPLHYAEPYF GGAVAAAYGL QAVQIHHPHM MAMVPARVPL  180
PLDLTEDEPI YVNAKQYRAI LRRRQFRAKL EAQNKLIKAR KPYLHESRHL HALKRARGNG  240
GRFLNTKQFQ ESEHIPSSHG LDMSRSTQLD LSAKISVSEV HQLENYKDAA STTSCSDITS  300
ASNSDEMFQQ PDFRFSGYPS HNGGAMQGHG GGNLHHLSGL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20187255269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024571.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
SwissprotQ93ZH23e-90NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A061GCT60.0A0A061GCT6_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 1
STRINGEOY271930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-76nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]