PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029052t1 | ||||||||
Common Name | TCM_029052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 26129.3 Da PI: 6.8404 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.6 | 3.2e-41 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l + e+++am+++v++++ara+dPv G++++i++lq+q+e ++ae Thecc1EG029052t1 14 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLTPPEKDIAMRTIVFQSDARANDPVGGCYRIIQELQRQIEYSQAE 106 7******************************************************************************************** PP DUF260 94 lallkee 100 l+l+ ++ Thecc1EG029052t1 107 LDLVFHQ 113 *998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.473 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-38 | 14 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSIPRTGSNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFLNAHKLF GVSNITKIIK 60 NLTPPEKDIA MRTIVFQSDA RANDPVGGCY RIIQELQRQI EYSQAELDLV FHQLAICRAQ 120 AHQQQQQSHL QMHEPGDSSL GCEMVNADPL NSYNSNYYYV EEPHEQQFSV NNNHHHLQEN 180 YDSWGIQEST TLDSLNVKQS FIRVSDNEVK PDLDILVKDI RSGLRLKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-29 | 8 | 114 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-29 | 8 | 114 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216467 | 6e-50 | AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007024503.2 | 1e-162 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 3e-71 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A061GB71 | 1e-171 | A0A061GB71_THECC; LOB domain-containing protein 22 | ||||
STRING | EOY27125 | 1e-172 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-64 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029052t1 |
Entrez Gene | 18596148 |
Publications ? help Back to Top | |||
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