PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029050t1 | ||||||||
Common Name | TCM_029050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21873.8 Da PI: 7.0752 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.7 | 1.9e-38 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk+ rrkCa+dC+lapyfp++++++f ++hklFG+ n++k++k+l+ e+++am+++++++++ra+dPv G++++i++lq+q+e ++ae Thecc1EG029050t1 14 ACAACKYRRRKCAPDCILAPYFPHDRQRQFLIAHKLFGVCNITKVIKDLNSPEKDIAMHTIIFQSDVRANDPVGGCYRIIQELQHQIEYSQAE 106 7******************************************************************************************** PP DUF260 94 lallkee 100 l+l+ ++ Thecc1EG029050t1 107 LDLVFHQ 113 *998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.17 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-35 | 14 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSILKTRSNG TTQACAACKY RRRKCAPDCI LAPYFPHDRQ RQFLIAHKLF GVCNITKVIK 60 DLNSPEKDIA MHTIIFQSDV RANDPVGGCY RIIQELQHQI EYSQAELDLV FHQLAICRAQ 120 AHQQQQQSHL QVQEPGDSTL GCEMVNADPL NSYNSNNYYV EEPQEQQFAV DNHHHHLMIF 180 GAFKNPQPVN L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-25 | 8 | 114 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-25 | 8 | 114 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007024503.2 | 1e-102 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 3e-61 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A061GCI7 | 1e-141 | A0A061GCI7_THECC; LOB domain-containing protein 22 | ||||
STRING | EOY27123 | 1e-142 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-56 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029050t1 |
Entrez Gene | 18596146 |
Publications ? help Back to Top | |||
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