PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028861t1
Common NameTCM_028861
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 321aa    MW: 34938.5 Da    PI: 6.5955
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028861t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.1e-17213247135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Thecc1EG028861t1 213 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 247
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-8120299IPR016679Transcription factor, GATA, plant
SMARTSM004014.7E-16207257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.189207243IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-14208245IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-15209270No hitNo description
CDDcd002029.48E-13212259No hitNo description
PfamPF003207.7E-15213247IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEAADFFVGG YYGGAAGGDF SSEMRMSAEQ KLAENFTVDD LLDFSNEDAI ISDGFFDNVA  60
GNSTDSSTVT CNSSVSGGDN HFSSANFPHS SQFSGELCVP YDDLAELEWL SNFVEDSFST  120
DQNLQSNLQI LATSKSPTPE SSSSSTRIES LTRSPTNPIF QNDTPLPGKA RSKRSRAAPC  180
DWSTRLLHLT PKSTGQKKRD NPNANSESLG RKCLHCAAEK TPQWRTGPMG PKTLCNACGV  240
RYKSGRLVPE YRPASSPTFM STKHSNSHRK VVELRRQKDL QRAQQQQFLS QTSIFGISNG  300
GGGGDDFLIH HGGPDFRHMI *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024273.20.0PREDICTED: GATA transcription factor 12
SwissprotO826322e-77GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A061GAJ10.0A0A061GAJ1_THECC; GATA transcription factor
STRINGEOY268950.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-65GATA transcription factor 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]