PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG028313t1 | ||||||||
Common Name | TCM_028313 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 302aa MW: 34122.4 Da PI: 4.6965 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.2 | 2.5e-47 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l+pGfrFhPtd el+++yL++kv gkk+++ e+i+evdiyk+ PwdLp k ++ ++ +wyfF++ +kky +g+r nrat g+Wk+tgkd++ Thecc1EG028313t1 6 LAPGFRFHPTDVELLQYYLRRKVLGKKFSF-EAIAEVDIYKYAPWDLPhKsLLRIGDLKWYFFCPMKKKYGKGSRFNRATPYGFWKTTGKDRP 97 579*************************99.89**************95345556889*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 v ++++vg +tLvf++g+ap+g +tdWv+heyrle Thecc1EG028313t1 98 VRY-NDKVVGSIRTLVFHRGKAPRGDRTDWVLHEYRLE 134 **9.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-57 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.995 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-23 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEKNSLAPGF RFHPTDVELL QYYLRRKVLG KKFSFEAIAE VDIYKYAPWD LPHKSLLRIG 60 DLKWYFFCPM KKKYGKGSRF NRATPYGFWK TTGKDRPVRY NDKVVGSIRT LVFHRGKAPR 120 GDRTDWVLHE YRLEDEHLLD EGVVQDDYVL CVIFCKDGPG HRNGAQYGAP FREEDWTDDE 180 EVIKEVFNST DLPTPTFTTA SPCFPQSQCL GSPAESSHFA ASPSVVLDAD KSLTSMEASQ 240 VLVDDSISAM LSAGQSEDYS PVAIANDDLE FLESPDIAVD DEIMSLLATF REDDTLNSLM 300 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 5 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 5 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3ulx_A | 3e-45 | 5 | 156 | 14 | 168 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-45 | 5 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 5 | 162 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978285.1 | 0.0 | PREDICTED: NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 5e-88 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A061GHJ5 | 0.0 | A0A061GHJ5_THECC; NAC domain containing protein 82, putative | ||||
STRING | EOY26524 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 3e-93 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG028313t1 |
Entrez Gene | 18595754 |
Publications ? help Back to Top | |||
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