PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028311t1
Common NameTCM_028311
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 270aa    MW: 30954.3 Da    PI: 6.2575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028311t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.86.5e-34101141105
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtd el+++yL++kv gkk+++ e+i+evdiyk+ PwdLp k  +++++ +wyfF++ +kky +g++ nrat+ gyW++t kd++
  Thecc1EG028311t1  10 LPPGFRFHPTDVELLQYYLRRKVLGKKFSF-EAIAEVDIYKYAPWDLPhKsLLRTGDLKWYFFCPMEKKYGKGSKFNRATTYGYWETTRKDRP 101
                       79**************************99.89**************95345566888*********************************** PP

               NAM  92 vlskkgelvglkkt 105
                       v   ++++vg  k 
  Thecc1EG028311t1 102 VRY-NDKVVGSIKL 114
                       *99.7777876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-394124IPR003441NAC domain
PROSITE profilePS5100532.99210156IPR003441NAC domain
PfamPF023651.3E-1511105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MFCSMEKNSL PPGFRFHPTD VELLQYYLRR KVLGKKFSFE AIAEVDIYKY APWDLPHKSL  60
LRTGDLKWYF FCPMEKKYGK GSKFNRATTY GYWETTRKDR PVRYNDKVVG SIKLWSSIEG  120
KPHEEREQIR FCTNTDLTRE LYRRLPFFVL SSARMVQAIE TVPNMEHHLE RRIRSQCLGS  180
PAESSHFAAS PSVVLDANKS LTPMEASQVL VDDSVSAMLS SGQSEDYSPV AITNDDLEFL  240
ESPDIVVDDE IMSLLATCRA DDTLNSLMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-30912114124Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298777.11e-127NAC domain-containing protein 82-like
TrEMBLA0A061GAC10.0A0A061GAC1_THECC; NAC domain containing protein 82
STRINGEOY265210.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-50NAC domain containing protein 103
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]