PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG028302t1 | ||||||||
Common Name | TCM_028302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 27921.4 Da PI: 4.2472 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.1 | 9.7e-25 | 6 | 87 | 1 | 81 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 l+pGfrFhPtd el ++yL++kv gkk+++ e+i+evdiyk+ PwdL+ + ++ ++ +wyfF++ +kky + +r nrat+ g Thecc1EG028302t1 6 LAPGFRFHPTDVELCQYYLRRKVLGKKFSF-EAIAEVDIYKYAPWDLRdEsLLRIGDLKWYFFCPMEKKYGKWSRFNRATAYG 87 579*************************99.89**************85346666899*********************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-28 | 3 | 111 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.045 | 6 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-11 | 8 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MERNSLAPGF RFHPTDVELC QYYLRRKVLG KKFSFEAIAE VDIYKYAPWD LRDESLLRIG 60 DLKWYFFCPM EKKYGKWSRF NRATAYGLED EPLLDKGVVQ DAYILCVIFC KDGPGHRNGA 120 QYGAPFREED LTDDEEVIKE VSNSTDLPTP TFTGAARPCF PQSQCLGSPA ESSHFAASPS 180 VVLDANKSLT PMEASQVLVD DSISAMLSSG QSEDYSPVAI ANDDLEFLES PEIAVDDEIM 240 SLLATLNVIT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-21 | 5 | 107 | 14 | 114 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021298777.1 | 1e-162 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 8e-50 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A061GBJ1 | 0.0 | A0A061GBJ1_THECC; NAC domain containing protein 82, putative | ||||
STRING | EOY26517 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 3e-52 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG028302t1 |
Entrez Gene | 18595749 |
Publications ? help Back to Top | |||
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