PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027858t1
Common NameTCM_027858
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 309aa    MW: 33850.5 Da    PI: 7.1019
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027858t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA511.9e-16230266135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Thecc1EG027858t1 230 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 266
                       *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.1E-1287122IPR010399Tify domain
PROSITE profilePS5132015.0487122IPR010399Tify domain
PfamPF062006.3E-1391121IPR010399Tify domain
PfamPF062033.6E-16154196IPR010402CCT domain
PROSITE profilePS5101713.245154196IPR010402CCT domain
PROSITE profilePS501148.972224272IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-13224277IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.18E-13225284No hitNo description
Gene3DG3DSA:3.30.50.106.8E-16228271IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.21E-14229272No hitNo description
PROSITE patternPS003440230257IPR000679Zinc finger, GATA-type
PfamPF003202.1E-14230266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGIHGKNGR MHMGNDVQQP MHHHVHYEHH HHIMNGNGMV DDDDVHHAHH HHHHHDVDDN  60
VGCGEAEGVE AGDLPSDHPG VLSDNQGPDN GDQLTLSFQG QVYVYDSVPP EKVQAVLLLL  120
GGREVPPTMP AIPITTQNNR GLPGTPQRFS VPQRLASLLR FREKRKERNF DKKIRYTVRK  180
EVALRMQRNK GQFTSSKPNT DDSVSAASSL GSNQSWGADG NGSQNQEIVC RHCGISEKST  240
PMMRRGPEGP RTLCNACGLM WANKGTLRDL SKAAPQTGNS SSLSKNGENV NFEADQVVRI  300
TENVSGSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1943521e-36EU194352.1 Corchorus capsularis cultivar JRC-412 SCAR marker SCS3 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007023733.20.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-128GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A061G9160.0A0A061G916_THECC; ZIM-like 1
STRINGEOY263550.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-119ZIM-LIKE 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]