PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027630t2
Common NameTCM_027630
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 483aa    MW: 52779.8 Da    PI: 6.1746
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027630t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.75.5e-33257311155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl
  Thecc1EG027630t2 257 KPRMRWTPELHECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 311
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.456254314IPR017930Myb domain
SuperFamilySSF466898.96E-18255311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-31256312IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25257312IPR006447Myb domain, plants
PfamPF002494.0E-9259310IPR001005SANT/Myb domain
PfamPF143792.4E-22348394IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MKVGMSSKTM NHPSYISVTQ SEPSKGIGES HHTAASPIHN FLSIGSEGQS SLAGECSSPH  60
PFPFIRTESF KNNLKSGPSS PISPSSHAKS AFSRSSVFCT SLYLSSSSTS ETQRQLGNLP  120
FLPHPPTCGQ SISAVDSSKS PVVFSEDLHN PYNEDHSEII MKDFLNFPGD DCDGNFHGLH  180
CESNNFTLTE QLELQFLSDE LDIAIADHGE NPRLDEIYET PQKLNVAFTC NQNSASVVPS  240
TDACSSIRLS GPAAVHKPRM RWTPELHECF VEAVSKLDGP EKATPKGVLK LMNVEGLTIY  300
HVKSHLQKYR LAKYMPEKKE EKKTSSSEEK KAALSGNESD GKKKGGTHIT EALRMQMEVQ  360
KQLHEQLELQ RSLQLRIEEH ARYLQKILEE QQKAGSALLP SLSMSTPTDP SQNSELQPSS  420
SSAIASPTQP SESKTELSSS LPSKHKAPEV NDCEPESSPK KLRTENKPES AADEAVVENP  480
AQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-26257314259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007023582.20.0PREDICTED: myb family transcription factor PHL6
RefseqXP_017979295.10.0PREDICTED: myb family transcription factor PHL6
SwissprotQ949U21e-143PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A061G9Y20.0A0A061G9Y2_THECC; Transcription factor, putative isoform 1
STRINGEOY262030.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-104G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]