PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG027630t1 | ||||||||
Common Name | TCM_027630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 493aa MW: 53943.2 Da PI: 6.0841 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.6 | 5.7e-33 | 267 | 321 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Thecc1EG027630t1 267 KPRMRWTPELHECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 321 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.456 | 264 | 324 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.32E-18 | 265 | 321 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-31 | 266 | 322 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-25 | 267 | 322 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-9 | 269 | 320 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-22 | 358 | 404 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MFNLEAALSW MKVGMSSKTM NHPSYISVTQ SEPSKGIGES HHTAASPIHN FLSIGSEGQS 60 SLAGECSSPH PFPFIRTESF KNNLKSGPSS PISPSSHAKS AFSRSSVFCT SLYLSSSSTS 120 ETQRQLGNLP FLPHPPTCGQ SISAVDSSKS PVVFSEDLHN PYNEDHSEII MKDFLNFPGD 180 DCDGNFHGLH CESNNFTLTE QLELQFLSDE LDIAIADHGE NPRLDEIYET PQKLNVAFTC 240 NQNSASVVPS TDACSSIRLS GPAAVHKPRM RWTPELHECF VEAVSKLDGP EKATPKGVLK 300 LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE EKKTSSSEEK KAALSGNESD GKKKGGTHIT 360 EALRMQMEVQ KQLHEQLELQ RSLQLRIEEH ARYLQKILEE QQKAGSALLP SLSMSTPTDP 420 SQNSELQPSS SSAIASPTQP SESKTELSSS LPSKHKAPEV NDCEPESSPK KLRTENKPES 480 AADEAVVENP AQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-26 | 267 | 324 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007023582.2 | 0.0 | PREDICTED: myb family transcription factor PHL6 | ||||
Refseq | XP_017979295.1 | 0.0 | PREDICTED: myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 1e-143 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A061G9Y2 | 0.0 | A0A061G9Y2_THECC; Transcription factor, putative isoform 1 | ||||
STRING | EOY26203 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-104 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG027630t1 |
Entrez Gene | 18595528 |
Publications ? help Back to Top | |||
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