PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027569t1
Common NameTCM_027569
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 371aa    MW: 41449.6 Da    PI: 7.6315
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027569t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.7e-1647106155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Thecc1EG027569t1  47 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 106
                       78*******************999955656446*************************98 PP
2AP251.23.2e-16149200155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Thecc1EG027569t1 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 200
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-1747116IPR016177DNA-binding domain
PfamPF008476.8E-1247106IPR001471AP2/ERF domain
SMARTSM003803.0E-2648120IPR001471AP2/ERF domain
PROSITE profilePS5103220.33648114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1648115IPR001471AP2/ERF domain
PRINTSPR003674.3E-64960IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17149210IPR016177DNA-binding domain
CDDcd000184.73E-24149210No hitNo description
PfamPF008475.9E-12149200IPR001471AP2/ERF domain
SMARTSM003801.2E-24150214IPR001471AP2/ERF domain
PROSITE profilePS5103218.334150208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17150209IPR001471AP2/ERF domain
PRINTSPR003674.3E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAKISQKTQK NSTDHENGTT ATVAKPTTKV KRTRKSVPRD CPPQRSSVYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI LNFPVSTYEN  120
ELKEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWIRPNH QSNPNNSENP QQILNGDTNS  240
TPSPNHDNIG IGFSIQPQSY STSETSMTTP PRLDGEGGGG GAGNDNSASA SSALGLLLQS  300
SKFKEMLERT SATNCPSTPP ERDLPRRSFP DDIQTYFDCQ DSSSYTEGDD IIFGHLNPFA  360
TPMFHCELDG *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978037.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-126AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A061G9U90.0A0A061G9U9_THECC; AP2 domain-containing transcription factor, putative
STRINGEOY261530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-92ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]