PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG027404t1

Common Name

TCM_027404

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 279aa MW: 30649 Da PI: 6.8901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG027404t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Thecc1EG027404t1 107 FSCNYCQRKFYSSQALGGHQNAH 129 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.38E-6	103	134	No hit	No description
PROSITE profile	PS50157	11.427	107	134	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEPLKSEPSL SETSSIISVS NGPAASLRTS MDSQKEGKQP EEEDHEHQQD VNYDLVLDLS 60 LSSKDDSNSN PELKPELNLI DCFKTDSSDD QDSLETPQGN ETEPRVFSCN YCQRKFYSSQ 120 ALGGHQNAHK RERTLAKRGQ RIGAASFAAF GHPNAHLSRY SSMASLPLHG SFNKSLGIQV 180 HSMIHKPAFL PSAHIYGHNG WSRRPIDSKP AIGHLSMEKF HVGINAGSSA SNAAARFETS 240 TRKLGPATEG MGGYWWVDSV NHFKTKQDEL KLDLSLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007023391.2	0.0	PREDICTED: zinc finger protein 1
TrEMBL	A0A061G9A1	0.0	A0A061G9A1_THECC; Zinc finger protein, putative
STRING	EOY26013	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	5e-46	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Thecc1EG027404t1
Entrez Gene	18595407

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]