PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027394t1
Common NameTCM_027394
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 179aa    MW: 20031.5 Da    PI: 6.7787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027394t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19755254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+f tae+Aa+a+++a++ + 
  Thecc1EG027394t1  7 RYRGVRQRH-WGSWVSEIRHPVL---KTRIWLGTFETAEDAARAYDEAARLMC 55
                      69******9.**********744...5**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-33666No hitNo description
Gene3DG3DSA:3.30.730.102.8E-34764IPR001471AP2/ERF domain
PfamPF008471.8E-11756IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
SMARTSM003803.5E-40770IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-21766IPR016177DNA-binding domain
PRINTSPR003672.8E-11819IPR001471AP2/ERF domain
PRINTSPR003672.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRPQQRYRG VRQRHWGSWV SEIRHPVLKT RIWLGTFETA EDAARAYDEA ARLMCGQKAR  60
TNFPYNPNEP QSSSSKLLSA TLAAKLHKCH MAALQLAKKN AAKESYAAQC HPLAPTSGIA  120
QSIGEMDCRR QPENKWDGEE SQVGSEQQFI PLEDDHIDQM IEELLDYGSI ELCSVTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17868667ATERF1
3gcc_A1e-17868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298313.11e-133ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-74ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A061GG331e-131A0A061GG33_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY260041e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-50ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]