PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG027348t1
Common NameTCM_027348
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 328aa    MW: 35223.9 Da    PI: 9.8667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG027348t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20184233255
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g
  Thecc1EG027348t1 184 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRG 233
                       69*******.**********32....25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.14E-32183242No hitNo description
SMARTSM003806.2E-33184247IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-21184241IPR016177DNA-binding domain
PROSITE profilePS5103222.748184241IPR001471AP2/ERF domain
PfamPF008476.3E-14184233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-29184241IPR001471AP2/ERF domain
PRINTSPR003671.5E-10185196IPR001471AP2/ERF domain
PRINTSPR003671.5E-10207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNVSFCHSLF SLTMQSSAIV NNHPLQTVSV FCRPETSETN ETPCLYKPLG ASSSHLSSCS  60
STIAPTHFYR QNYLPIYADV SGVFSSLNAL DKIHETELET IMETRPETPP VLDGIAAVVG  120
QHVLFGNKTN PTAPTTTTEL SNSVILSDAT SSKLEVPGFL SASQRFGSNK RNVSPAVAVS  180
VQKSYRGVRK RPWGRWSAEI RDRIGRCRHW LGTFDTAEEA ARAYDSAARR LRGSKAKTNF  240
EIPSVLPLAS PSTSSSSTEA KKKVKGKVKT ERKCAVVTSV AHLFSPSSFG GSEGKGNVEL  300
ELKLGVGLNS KGTASNTSLV KQAIPLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18183242161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978247.10.0PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M53e-26ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A061G8T00.0A0A061G8T0_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY259760.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-24ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]