PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG027272t1

Common Name

TCM_027272

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 790aa MW: 91158.8 Da PI: 5.0301

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG027272t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8e-22	180	263	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + Thecc1EG027272t1 180 NYYNYYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 263 69**************************************99888.....8999*****************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-19	180	262	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-28	385	478	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.889	671	707	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.7E-6	682	709	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MPIIASTLTH QVNTAKAKDR IPQNAPKWSS RLGKTNLSYF DARLLTLTPT MADDSTFSPS 60 DHQALSPSPD LDITIEEGSQ NSEQLFEDDG NELEMEGNEL EIEGNDIDIE SNGLEIEGNG 120 LDIESNGLQD CDQMLEIEDN HENDGDETTA VAVENGISQG KDYPPPVVGM EFESYDDAYN 180 YYNYYAKELG FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK TIKEANSRRK ETRTGCLAMI 240 RLRLVESNRW RVDEVKLEHN HLFDHERAQN CKSHKKMDAV AKRKVEPAVD VEVRTIKLYR 300 TPVVDPVGYG SSNSLEGEIS DNVDRSKRLK LKKGDSQIIY NYFSHIQLAN PNFVYLMDLN 360 DEGYLRNVFW IDSRSRAAYG YFGDVVKIDT TCLSNKYEIP LVAFVGVNHH GQSILLGCGL 420 LADNTFETYV WLFRAWLTCM SGRPPQTIIT DQCRTMQGAI SEVFPRAHHR LHLSHVMQSV 480 LENLGELQES GVFQMILNRI VYDSLKVDEF EMGWDDMIRR FGIADHAWLR SLYEERERWA 540 PVYLKDTFFA GMCSFQSGES MSSYFDGYVH KQTSLEEFFD MYELILQKKH KREALDDLES 600 RDSDPMLKTR CYYEIQLSKL YTNSIFRRFQ DEVVMMTSCL SITQVNANGP VITYMIKEPE 660 GEGDQRDMRN FEVMYDKAGM EIRCICGCFN FNGYLCRHGL YVLNYNGLEE IPFQYILSRW 720 RKDFKRLYMP DLGSNNIDIT NPVQWFDHLY RRSMQVVEEG MRSQDHYMVA WQAFKESLNK 780 VRLVADKHV*

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MPIIASTLTH QVNTAKAKDR IPQNAPKWSS RLGKTNLSYF DARLLTLTPT MADDSTFSPS  60
DHQALSPSPD LDITIEEGSQ NSEQLFEDDG NELEMEGNEL EIEGNDIDIE SNGLEIEGNG  120
LDIESNGLQD CDQMLEIEDN HENDGDETTA VAVENGISQG KDYPPPVVGM EFESYDDAYN  180
YYNYYAKELG FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK TIKEANSRRK ETRTGCLAMI  240
RLRLVESNRW RVDEVKLEHN HLFDHERAQN CKSHKKMDAV AKRKVEPAVD VEVRTIKLYR  300
TPVVDPVGYG SSNSLEGEIS DNVDRSKRLK LKKGDSQIIY NYFSHIQLAN PNFVYLMDLN  360
DEGYLRNVFW IDSRSRAAYG YFGDVVKIDT TCLSNKYEIP LVAFVGVNHH GQSILLGCGL  420
LADNTFETYV WLFRAWLTCM SGRPPQTIIT DQCRTMQGAI SEVFPRAHHR LHLSHVMQSV  480
LENLGELQES GVFQMILNRI VYDSLKVDEF EMGWDDMIRR FGIADHAWLR SLYEERERWA  540
PVYLKDTFFA GMCSFQSGES MSSYFDGYVH KQTSLEEFFD MYELILQKKH KREALDDLES  600
RDSDPMLKTR CYYEIQLSKL YTNSIFRRFQ DEVVMMTSCL SITQVNANGP VITYMIKEPE  660
GEGDQRDMRN FEVMYDKAGM EIRCICGCFN FNGYLCRHGL YVLNYNGLEE IPFQYILSRW  720
RKDFKRLYMP DLGSNNIDIT NPVQWFDHLY RRSMQVVEEG MRSQDHYMVA WQAFKESLNK  780
VRLVADKHV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007023282.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A061GFT1	0.0	A0A061GFT1_THECC; FAR1-related sequence 8
STRING	EOY25904	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Thecc1EG027272t1
Entrez Gene	18595325

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]